PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3CX5

#CDRs = 8; #Clusters = 10.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
J	heavy	Mus.musculus	Mo_IGHV3-6*01	89.0	Mo_IGHV3-6*01	100.0	H1	14	H1-14-1	9	SVTGYSITSgYYWN	BBBLBBAAAEEBBB
J	heavy	Mus.musculus	Mo_IGHV3-6*01	89.0	Mo_IGHV3-6*01	66.7	H2	9	H2-9-1	15	YISNVGDNN	BBBAALBBB
J	heavy	Mus.musculus	Mo_IGHV3-6*01	89.0	Mo_IGHV3-6*01	100.0	H3	15	H3-15-*	-1	ARSEYYSvTGYAMDY
J	heavy	Mus.musculus	Mo_IGHV3-6*01	89.0	Mo_IGHV3-6*01	100.0	H4	8	H4-8-1	11	RDTSKNQF	BBAAALBB
K	kappa	Mus.musculus	Mo_IGKV10-96*03	89.9	Mo_IGKV10-96*03	81.8	L1	11	L1-11-2	10	RASQDINNFLN	BBABBALLBBB
K	kappa	Mus.musculus	Mo_IGKV10-96*03	89.9	Mo_IGKV10-96*03	87.5	L2	8	L2-8-1	9	YYTSRLHA	BLLABBBB
K	kappa	Mus.musculus	Mo_IGKV10-96*03	89.9	Mo_IGKV10-96*03	42.9	L3	9	L3-9-cis7-1	9	QHHIKFPWT	BBAABBbBB
K	kappa	Mus.musculus	Mo_IGKV10-96*03	89.9	Mo_IGKV10-96*03	100.0	L4	6	L4-6-1	12	GSGTDY	EBEABB
U	heavy	Mus.musculus	Mo_IGHV3-6*01	89.0	Mo_IGHV3-6*01	100.0	H1	14	H1-14-*	-1	SVTGYSITSgYYWN	BBBLBBAABBBBBB
U	heavy	Mus.musculus	Mo_IGHV3-6*01	89.0	Mo_IGHV3-6*01	66.7	H2	9	H2-9-1	14	YISNVGDNN	BBBAALBBB
U	heavy	Mus.musculus	Mo_IGHV3-6*01	89.0	Mo_IGHV3-6*01	100.0	H3	15	H3-15-*	-1	ARSEYYSvTGYAMDY
U	heavy	Mus.musculus	Mo_IGHV3-6*01	89.0	Mo_IGHV3-6*01	100.0	H4	8	H4-8-1	10	RDTSKNQF	BBAAALBB
V	kappa	Mus.musculus	Mo_IGKV10-96*03	89.9	Mo_IGKV10-96*03	81.8	L1	11	L1-11-*	-1	RASQDINNFLN	BBABBBAABBB
V	kappa	Mus.musculus	Mo_IGKV10-96*03	89.9	Mo_IGKV10-96*03	87.5	L2	8	L2-8-1	10	YYTSRLHA	BLLABBBB
V	kappa	Mus.musculus	Mo_IGKV10-96*03	89.9	Mo_IGKV10-96*03	42.9	L3	9	L3-9-cis7-1	14	QHHIKFPWT	BBAABBbBB
V	kappa	Mus.musculus	Mo_IGKV10-96*03	89.9	Mo_IGKV10-96*03	100.0	L4	6	L4-6-1	15	GSGTDY	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022