PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3CMO

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Mus.musculus	Mo_IGHV1-5*01	98.6	Mo_IGHV1-5*01	92.3	H1	13	H1-13-1	12	KASGYTFTSYWMH	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV1-5*01	98.6	Mo_IGHV1-5*01	100.0	H2	10	H2-10-1	11	AIYPGNSDTS	BBBAAALBBB
H	heavy	Mus.musculus	Mo_IGHV1-5*01	98.6	Mo_IGHV1-5*01	100.0	H3	16	H3-16-*	-1	TRWPHYygGSRYYFDY
H	heavy	Mus.musculus	Mo_IGHV1-5*01	98.6	Mo_IGHV1-5*01	100.0	H4	8	H4-8-1	10	AVTSASTA	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV10-94*03	91.3	Mo_IGKV10-94*03	100.0	L1	11	L1-11-2	8	RASQDISNYLN	BBABBALLBBB
L	kappa	Mus.musculus	Mo_IGKV10-94*03	91.3	Mo_IGKV10-94*03	87.5	L2	8	L2-8-1	6	YYTSRLQS	BLEABBBB
L	kappa	Mus.musculus	Mo_IGKV10-94*03	91.3	Mo_IGKV10-94*03	85.7	L3	8	L3-8-1	6	QQYSKLFT	BBAABEBB
L	kappa	Mus.musculus	Mo_IGKV10-94*03	91.3	Mo_IGKV10-94*03	83.3	L4	6	L4-6-1	7	GSGSDY	EBEABB
X	kappa	Mus.musculus	Mo_IGKV10-94*03	91.3	Mo_IGKV10-94*03	100.0	L1	11	L1-11-2	7	RASQDISNYLN	BBABBALLBBB
X	kappa	Mus.musculus	Mo_IGKV10-94*03	91.3	Mo_IGKV10-94*03	87.5	L2	8	L2-8-1	9	YYTSRLQS	BLEABBBB
X	kappa	Mus.musculus	Mo_IGKV10-94*03	91.3	Mo_IGKV10-94*03	85.7	L3	8	L3-8-1	8	QQYSKLFT	BBAABEBB
X	kappa	Mus.musculus	Mo_IGKV10-94*03	91.3	Mo_IGKV10-94*03	83.3	L4	6	L4-6-1	8	GSGSDY	EBEABB
Y	heavy	Mus.musculus	Mo_IGHV1-5*01	98.6	Mo_IGHV1-5*01	92.3	H1	13	H1-13-1	16	KASGYTFTSYWMH	BBBLBBAAABBBB
Y	heavy	Mus.musculus	Mo_IGHV1-5*01	98.6	Mo_IGHV1-5*01	100.0	H2	10	H2-10-1	14	AIYPGNSDTS	BBBAAALBBB
Y	heavy	Mus.musculus	Mo_IGHV1-5*01	98.6	Mo_IGHV1-5*01	100.0	H3	16	H3-16-*	-1	TRWPHYygGSRYYFDY
Y	heavy	Mus.musculus	Mo_IGHV1-5*01	98.6	Mo_IGHV1-5*01	100.0	H4	8	H4-8-1	19	AVTSASTA	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022