PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3CFD

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV10-96*02	97.1	Mo_IGKV10-96*02	100.0	L1	11	L1-11-2	7	RASQDISNYLN	BBABBALLBBB
A	kappa	Mus.musculus	Mo_IGKV10-96*02	97.1	Mo_IGKV10-96*02	100.0	L2	8	L2-8-1	6	YYTSRLHS	BLEABBBB
A	kappa	Mus.musculus	Mo_IGKV10-96*02	97.1	Mo_IGKV10-96*02	85.7	L3	9	L3-9-cis7-1	10	QQGTTLPPT	BBAABBbBB
A	kappa	Mus.musculus	Mo_IGKV10-96*02	97.1	Mo_IGKV10-96*02	100.0	L4	6	L4-6-1	10	GSGTDY	EBEABB
B	heavy	Mus.musculus	Mo_IGHV3-2*02	94.5	Mo_IGHV3-2*02	100.0	H1	14	H1-14-1	5	TVTGYSITsDYAWN	BBBLBBAAABEBBB
B	heavy	Mus.musculus	Mo_IGHV3-2*02	94.5	Mo_IGHV3-2*02	66.7	H2	9	H2-9-1	9	YISYSGRIR	BBBAALBBB
B	heavy	Mus.musculus	Mo_IGHV3-2*02	94.5	Mo_IGHV3-2*02	100.0	H3	13	H3-13-*	-1	ARSDYGNYGRGDY	BBBBBEEALBBAB
B	heavy	Mus.musculus	Mo_IGHV3-2*02	94.5	Mo_IGHV3-2*02	100.0	H4	8	H4-8-1	8	RDTSKNQF	BBAAALBB
H	heavy	Mus.musculus	Mo_IGHV3-2*02	94.5	Mo_IGHV3-2*02	100.0	H1	14	H1-14-1	6	TVTGYSITsDYAWN	BBBLBBAAABEBBB
H	heavy	Mus.musculus	Mo_IGHV3-2*02	94.5	Mo_IGHV3-2*02	66.7	H2	9	H2-9-1	8	YISYSGRIR	BBBAALBBB
H	heavy	Mus.musculus	Mo_IGHV3-2*02	94.5	Mo_IGHV3-2*02	100.0	H3	13	H3-13-*	-1	ARSDYGNYGRGDY	BBBBBEEALBBAB
H	heavy	Mus.musculus	Mo_IGHV3-2*02	94.5	Mo_IGHV3-2*02	100.0	H4	8	H4-8-1	8	RDTSKNQF	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV10-96*02	97.1	Mo_IGKV10-96*02	100.0	L1	11	L1-11-2	6	RASQDISNYLN	BBABBALLBBB
L	kappa	Mus.musculus	Mo_IGKV10-96*02	97.1	Mo_IGKV10-96*02	100.0	L2	8	L2-8-1	5	YYTSRLHS	BLEABBBB
L	kappa	Mus.musculus	Mo_IGKV10-96*02	97.1	Mo_IGKV10-96*02	85.7	L3	9	L3-9-cis7-1	11	QQGTTLPPT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV10-96*02	97.1	Mo_IGKV10-96*02	100.0	L4	6	L4-6-1	9	GSGTDY	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022