PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3CFB

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV2-109*01	100.0	Mo_IGKV2-109*01	93.8	L1	16	L1-16-1	9	RSTKSLlhsngITYLY	BBABBABBAALBBBBB
A	kappa	Mus.musculus	Mo_IGKV2-109*01	100.0	Mo_IGKV2-109*01	100.0	L2	8	L2-8-1	7	YQMSNLAS	BLLABBBB
A	kappa	Mus.musculus	Mo_IGKV2-109*01	100.0	Mo_IGKV2-109*01	100.0	L3	9	L3-9-cis7-1	11	AQNLELPPT	BBAABBbBB
A	kappa	Mus.musculus	Mo_IGKV2-109*01	100.0	Mo_IGKV2-109*01	100.0	L4	6	L4-6-3	12	GSGTDF	EBAABB
B	heavy	Mus.musculus	Mo_IGHV5-6-5*01	95.9	Mo_IGHV5-6-5*01	69.2	H1	13	H1-13-1	20	TASGITFSRYIMS	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV5-6-5*01	95.9	Mo_IGHV5-6-5*01	88.9	H2	9	H2-9-1	5	SISSGGITY	BBBAALBBB
B	heavy	Mus.musculus	Mo_IGHV5-6-5*01	95.9	Mo_IGHV5-6-5*01	100.0	H3	8	H3-8-*	-1	ARGQGRPY	BBABEBBB
B	heavy	Mus.musculus	Mo_IGHV5-6-5*01	95.9	Mo_IGHV5-6-5*01	87.5	H4	8	H4-8-1	10	RDNVRNIL	BBAAALBB
H	heavy	Mus.musculus	Mo_IGHV5-6-5*01	95.9	Mo_IGHV5-6-5*01	69.2	H1	13	H1-13-1	19	TASGITFSRYIMS	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV5-6-5*01	95.9	Mo_IGHV5-6-5*01	88.9	H2	9	H2-9-1	8	SISSGGITY	BBBAALBBB
H	heavy	Mus.musculus	Mo_IGHV5-6-5*01	95.9	Mo_IGHV5-6-5*01	100.0	H3	8	H3-8-*	-1	ARGQGRPY	BBABEBBB
H	heavy	Mus.musculus	Mo_IGHV5-6-5*01	95.9	Mo_IGHV5-6-5*01	87.5	H4	8	H4-8-1	12	RDNVRNIL	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV2-109*01	100.0	Mo_IGKV2-109*01	93.8	L1	16	L1-16-1	6	RSTKSLlhsngITYLY	BBABBABBAALBBBBB
L	kappa	Mus.musculus	Mo_IGKV2-109*01	100.0	Mo_IGKV2-109*01	100.0	L2	8	L2-8-1	7	YQMSNLAS	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV2-109*01	100.0	Mo_IGKV2-109*01	100.0	L3	9	L3-9-cis7-1	10	AQNLELPPT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV2-109*01	100.0	Mo_IGKV2-109*01	100.0	L4	6	L4-6-1	11	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022