PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3CDF

#CDRs = 4; #Clusters = 4.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Homo.sapiens	Hu_IGKV1-33*01	98.6	Hu_IGKV1-33*01	100.0	L1	11	L1-11-1	6	QASQDISNYLN	BBABBAEABBB
A	kappa	Homo.sapiens	Hu_IGKV1-33*01	98.6	Hu_IGKV1-33*01	100.0	L2	8	L2-8-1	8	YDASNLET	BLLABBBB
A	kappa	Homo.sapiens	Hu_IGKV1-33*01	98.6	Hu_IGKV1-33*01	100.0	L3	9	L3-9-cis7-1	18	QQYDNlPYT	BBAABBbBB
A	kappa	Homo.sapiens	Hu_IGKV1-33*01	98.6	Hu_IGKV1-33*01	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB
B	kappa	Homo.sapiens	Hu_IGKV1-33*01	98.6	Hu_IGKV1-33*01	100.0	L1	11	L1-11-1	6	QASQDISNYLN	BBABBAEABBB
B	kappa	Homo.sapiens	Hu_IGKV1-33*01	98.6	Hu_IGKV1-33*01	100.0	L2	8	L2-8-1	5	YDASNLET	BLLABBBB
B	kappa	Homo.sapiens	Hu_IGKV1-33*01	98.6	Hu_IGKV1-33*01	100.0	L3	9	L3-9-cis7-1	9	QQYDNlPYT	BBAABBbBB
B	kappa	Homo.sapiens	Hu_IGKV1-33*01	98.6	Hu_IGKV1-33*01	100.0	L4	6	L4-6-1	11	GSGTDF	EBEABB
C	kappa	Homo.sapiens	Hu_IGKV1-33*01	98.6	Hu_IGKV1-33*01	100.0	L1	11	L1-11-1	6	QASQDISNYLN	BBABBAEABBB
C	kappa	Homo.sapiens	Hu_IGKV1-33*01	98.6	Hu_IGKV1-33*01	100.0	L2	8	L2-8-1	8	YDASNLET	BLLABBBB
C	kappa	Homo.sapiens	Hu_IGKV1-33*01	98.6	Hu_IGKV1-33*01	100.0	L3	9	L3-9-cis7-1	18	QQYDNlPYT	BBAABBbBB
C	kappa	Homo.sapiens	Hu_IGKV1-33*01	98.6	Hu_IGKV1-33*01	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB
D	kappa	Homo.sapiens	Hu_IGKV1-33*01	98.6	Hu_IGKV1-33*01	100.0	L1	11	L1-11-1	5	QASQDISNYLN	BBABBAEABBB
D	kappa	Homo.sapiens	Hu_IGKV1-33*01	98.6	Hu_IGKV1-33*01	100.0	L2	8	L2-8-1	5	YDASNLET	BLLABBBB
D	kappa	Homo.sapiens	Hu_IGKV1-33*01	98.6	Hu_IGKV1-33*01	100.0	L3	9	L3-9-cis7-1	9	QQYDNlPYT	BBAABBbBB
D	kappa	Homo.sapiens	Hu_IGKV1-33*01	98.6	Hu_IGKV1-33*01	100.0	L4	6	L4-6-1	10	GSGTDF	EBEABB
E	kappa	Homo.sapiens	Hu_IGKV1-33*01	98.6	Hu_IGKV1-33*01	100.0	L1	11	L1-11-1	6	QASQDISNYLN	BBABBAEABBB
E	kappa	Homo.sapiens	Hu_IGKV1-33*01	98.6	Hu_IGKV1-33*01	100.0	L2	8	L2-8-1	7	YDASNLET	BLLABBBB
E	kappa	Homo.sapiens	Hu_IGKV1-33*01	98.6	Hu_IGKV1-33*01	100.0	L3	9	L3-9-cis7-1	18	QQYDNlPYT	BBAABBbBB
E	kappa	Homo.sapiens	Hu_IGKV1-33*01	98.6	Hu_IGKV1-33*01	100.0	L4	6	L4-6-1	10	GSGTDF	EBEABB
F	kappa	Homo.sapiens	Hu_IGKV1-33*01	98.6	Hu_IGKV1-33*01	100.0	L1	11	L1-11-1	5	QASQDISNYLN	BBABBAEABBB
F	kappa	Homo.sapiens	Hu_IGKV1-33*01	98.6	Hu_IGKV1-33*01	100.0	L2	8	L2-8-1	5	YDASNLET	BLLABBBB
F	kappa	Homo.sapiens	Hu_IGKV1-33*01	98.6	Hu_IGKV1-33*01	100.0	L3	9	L3-9-cis7-1	10	QQYDNlPYT	BBAABBbBB
F	kappa	Homo.sapiens	Hu_IGKV1-33*01	98.6	Hu_IGKV1-33*01	100.0	L4	6	L4-6-1	10	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022