PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3BSZ

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Mus.musculus	Mo_IGHV1-5*01	97.2	Mo_IGHV1-5*01	84.6	H1	13	H1-13-*	-1	KASGYSFTSYWMH	BBBLBBAAABBEB
H	heavy	Mus.musculus	Mo_IGHV1-5*01	97.2	Mo_IGHV1-5*01	60.0	H2	10	H2-10-1	14	GVYPGDSHTS	BBBAAALBBB
H	heavy	Mus.musculus	Mo_IGHV1-5*01	97.2	Mo_IGHV1-5*01	100.0	H3	11	H3-11-*	-1	TRSGFDYGNED	BBBBAABLEAB
H	heavy	Mus.musculus	Mo_IGHV1-5*01	97.2	Mo_IGHV1-5*01	100.0	H4	8	H4-8-1	20	AVTSASTA	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV3-5*01	98.6	Mo_IGKV3-5*01	100.0	L1	15	L1-15-1	22	RASESVDSYgnsfMH	BBABBABBLLBBBBB
L	kappa	Mus.musculus	Mo_IGKV3-5*01	98.6	Mo_IGKV3-5*01	100.0	L2	8	L2-8-*	-1	YRASNLES	BLLLBBBB
L	kappa	Mus.musculus	Mo_IGKV3-5*01	98.6	Mo_IGKV3-5*01	100.0	L3	9	L3-9-cis7-1	14	QQSNEDPYT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV3-5*01	98.6	Mo_IGKV3-5*01	100.0	L4	6	L4-6-1	19	GSRTDF	EEEABB
M	kappa	Mus.musculus	Mo_IGKV3-5*01	98.6	Mo_IGKV3-5*01	100.0	L1	15	L1-15-1	21	RASESVDSYgnsfMH	BBABBABBLLBBBBB
M	kappa	Mus.musculus	Mo_IGKV3-5*01	98.6	Mo_IGKV3-5*01	100.0	L2	8	L2-8-*	-1	YRASNLES	BLLLBBBB
M	kappa	Mus.musculus	Mo_IGKV3-5*01	98.6	Mo_IGKV3-5*01	100.0	L3	9	L3-9-cis7-1	14	QQSNEDPYT	BBAABBbBB
M	kappa	Mus.musculus	Mo_IGKV3-5*01	98.6	Mo_IGKV3-5*01	100.0	L4	6	L4-6-1	20	GSRTDF	EEEABB
N	heavy	Mus.musculus	Mo_IGHV1-5*01	97.2	Mo_IGHV1-5*01	84.6	H1	13	H1-13-*	-1	KASGYSFTSYWMH	BBBLBBAAABBEB
N	heavy	Mus.musculus	Mo_IGHV1-5*01	97.2	Mo_IGHV1-5*01	60.0	H2	10	H2-10-1	14	GVYPGDSHTS	BBBAAALBBB
N	heavy	Mus.musculus	Mo_IGHV1-5*01	97.2	Mo_IGHV1-5*01	100.0	H3	11	H3-11-*	-1	TRSGFDYGNED	BBBBAABEEAB
N	heavy	Mus.musculus	Mo_IGHV1-5*01	97.2	Mo_IGHV1-5*01	100.0	H4	8	H4-8-1	20	AVTSASTA	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022