PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3BN9

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	81.8	L1	11	L1-11-1	8	RASQGISSYLA	BBABBAEABBB
C	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	100.0	L2	8	L2-8-1	8	YAASSLQS	BLLABBBB
C	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	42.9	L3	9	L3-9-cis7-1	17	QQHGNLPYT	BBAABBbBB
C	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	10	GSGTDF	EBEABB
D	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	100.0	H1	13	H1-13-1	11	AASGFTFSSYAMS	BBBLBBAAABBBB
D	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	100.0	H2	10	H2-10-2	9	AISGSGGSTY	BBBAALABBB
D	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	50.0	H3	21	H3-21-*	-1	ARpyltypqRRGPQNVSPFDN
D	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	100.0	H4	8	H4-8-1	7	RDNSKNTL	BBAAALBB
E	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	81.8	L1	11	L1-11-1	11	RASQGISSYLA	BBABBAEABBB
E	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	100.0	L2	8	L2-8-1	8	YAASSLQS	BLLABBBB
E	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	42.9	L3	9	L3-9-cis7-1	15	QQHGNLPYT	BBAABBbBB
E	kappa	Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB
F	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	100.0	H1	13	H1-13-1	8	AASGFTFSSYAMS	BBBLBBAAABBBB
F	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	100.0	H2	10	H2-10-2	15	AISGSGGSTY	BBBAALABBB
F	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	50.0	H3	21	H3-21-*	-1	ARpyltypqRRGPQNVSPFDN
F	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	100.0	H4	8	H4-8-1	9	RDNSKNTL	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022