PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3BGF

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
B	heavy	Mus.musculus	Mo_IGHV1-5*01	90.4	Mo_IGHV1-5*01	76.9	H1	13	H1-13-1	11	KASGYTFTTYRMH	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV1-5*01	90.4	Mo_IGHV1-5*01	90.0	H2	10	H2-10-1	13	AIYPGNSDTT	BBBAAALBBB
B	heavy	Mus.musculus	Mo_IGHV1-5*01	90.4	Mo_IGHV1-5*01	100.0	H3	14	H3-14-*	-1	TREGIPQLLRTLDY	BBBBBbAAAABLAB
B	heavy	Mus.musculus	Mo_IGHV1-5*01	90.4	Mo_IGHV1-5*01	75.0	H4	8	H4-8-1	8	AVTSTSSA	BBAAALBB
C	kappa	Mus.musculus	Mo_IGKV9-124*01	97.1	Mo_IGKV9-124*01	100.0	L1	11	L1-11-2	7	RASQEISGYLS	BBABBALLBBB
C	kappa	Mus.musculus	Mo_IGKV9-124*01	97.1	Mo_IGKV9-124*01	100.0	L2	8	L2-8-1	7	YAASTLDS	BLLABBBB
C	kappa	Mus.musculus	Mo_IGKV9-124*01	97.1	Mo_IGKV9-124*01	85.7	L3	9	L3-9-cis7-1	9	LQYVSYPWT	BBAABBbBB
C	kappa	Mus.musculus	Mo_IGKV9-124*01	97.1	Mo_IGKV9-124*01	100.0	L4	6	L4-6-2	15	RSGSDY	BBEABB
H	heavy	Mus.musculus	Mo_IGHV1-5*01	90.4	Mo_IGHV1-5*01	76.9	H1	13	H1-13-1	10	KASGYTFTTYRMH	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV1-5*01	90.4	Mo_IGHV1-5*01	90.0	H2	10	H2-10-1	14	AIYPGNSDTT	BBBAAALBBB
H	heavy	Mus.musculus	Mo_IGHV1-5*01	90.4	Mo_IGHV1-5*01	100.0	H3	14	H3-14-*	-1	TREGIPQLLRTLDY	BBBBBbAAAABLAB
H	heavy	Mus.musculus	Mo_IGHV1-5*01	90.4	Mo_IGHV1-5*01	75.0	H4	8	H4-8-1	8	AVTSTSSA	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV9-124*01	97.1	Mo_IGKV9-124*01	100.0	L1	11	L1-11-2	8	RASQEISGYLS	BBABBALLBBB
L	kappa	Mus.musculus	Mo_IGKV9-124*01	97.1	Mo_IGKV9-124*01	100.0	L2	8	L2-8-1	7	YAASTLDS	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV9-124*01	97.1	Mo_IGKV9-124*01	85.7	L3	9	L3-9-cis7-1	9	LQYVSYPWT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV9-124*01	97.1	Mo_IGKV9-124*01	100.0	L4	6	L4-6-2	14	RSGSDY	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022