PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3B9K

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	kappa	Rattus.Rattus	Ra_IGKV19S2*01	94.2	Ra_IGKV19S2*01	90.9	L1	11	L1-11-2	7	QASQNIDKYIA	BBABBALLBBB
C	kappa	Rattus.Rattus	Ra_IGKV19S2*01	94.2	Ra_IGKV19S2*01	100.0	L2	8	L2-8-1	11	HYTSTLVS	BLEABBBB
C	kappa	Rattus.Rattus	Ra_IGKV19S2*01	94.2	Ra_IGKV19S2*01	71.4	L3	8	L3-8-1	11	LQYDTLYT	BBAABEBB
C	kappa	Rattus.Rattus	Ra_IGKV19S2*01	94.2	Ra_IGKV19S2*01	100.0	L4	6	L4-6-1	15	GSGRDY	EBEABB
D	heavy	Rattus.Rattus	Ra_IGHV2-1*01	94.5	Ra_IGHV2-1*01	76.9	H1	13	H1-13-1	14	SVSGFSLISDSVH	BBBLBBAAABBBB
D	heavy	Rattus.Rattus	Ra_IGHV2-1*01	94.5	Ra_IGHV2-1*01	55.6	H2	9	H2-9-1	12	GIWADGSTE	BBBAALBBB
D	heavy	Rattus.Rattus	Ra_IGHV2-1*01	94.5	Ra_IGHV2-1*01	50.0	H3	11	H3-11-*	-1	TSNRESYYFDY	BBBAABABBAB
D	heavy	Rattus.Rattus	Ra_IGHV2-1*01	94.5	Ra_IGHV2-1*01	87.5	H4	8	H4-8-1	11	RDTSKSQG	BBAAALBB
H	heavy	Rattus.Rattus	Ra_IGHV2-1*01	94.5	Ra_IGHV2-1*01	76.9	H1	13	H1-13-1	13	SVSGFSLISDSVH	BBBLBBAAABBBB
H	heavy	Rattus.Rattus	Ra_IGHV2-1*01	94.5	Ra_IGHV2-1*01	55.6	H2	9	H2-9-1	15	GIWADGSTE	BBBAALBBB
H	heavy	Rattus.Rattus	Ra_IGHV2-1*01	94.5	Ra_IGHV2-1*01	50.0	H3	11	H3-11-*	-1	TSNRESYYFDY	BBBAABABBAB
H	heavy	Rattus.Rattus	Ra_IGHV2-1*01	94.5	Ra_IGHV2-1*01	87.5	H4	8	H4-8-1	10	RDTSKSQG	BBAAALBB
L	kappa	Rattus.Rattus	Ra_IGKV19S2*01	94.2	Ra_IGKV19S2*01	90.9	L1	11	L1-11-2	13	QASQNIDKYIA	BBAEBALLBBB
L	kappa	Rattus.Rattus	Ra_IGKV19S2*01	94.2	Ra_IGKV19S2*01	100.0	L2	8	L2-8-1	9	HYTSTLVS	BLEABBBB
L	kappa	Rattus.Rattus	Ra_IGKV19S2*01	94.2	Ra_IGKV19S2*01	71.4	L3	8	L3-8-1	11	LQYDTLYT	BBAABEBB
L	kappa	Rattus.Rattus	Ra_IGKV19S2*01	94.2	Ra_IGKV19S2*01	100.0	L4	6	L4-6-1	11	GSGRDY	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022