PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3B2U

#CDRs = 8; #Clusters = 10.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV4-30-4*01	100.0	H1	15	H1-15-2	18	TVSGGSISsgDYYWS	BBBLEBABBAABBBB
C	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV4-30-4*01	88.9	H2	9	H2-9-1	12	YIYYSGSTD	BBBAALBBB
C	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV4-30-4*01	100.0	H3	13	H3-13-*	-1	ARVSIFGVGTFDY	BBBBAABALBBAB
C	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV4-30-4*01	100.0	H4	8	H4-8-1	13	VDTSKNQF	BBAAALBB
D	kappa	Homo.sapiens	Hu_IGKV3D-11*02	97.1	Hu_IGKV3D-11*02	100.0	L1	11	L1-11-1	10	RASQSVSSYLA	BBABBAEABBB
D	kappa	Homo.sapiens	Hu_IGKV3D-11*02	97.1	Hu_IGKV3D-11*02	100.0	L2	8	L2-8-1	6	YDASNRAT	BLLABBBB
D	kappa	Homo.sapiens	Hu_IGKV3D-11*02	97.1	Hu_IGKV3D-11*02	14.3	L3	9	L3-9-cis7-1	7	HQYGSTPLT	BBAABBbBB
D	kappa	Homo.sapiens	Hu_IGKV3D-11*02	97.1	Hu_IGKV3D-11*02	83.3	L4	6	L4-6-1	4	GSGTDF	EBEABB
F	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV4-30-4*01	100.0	H1	15	H1-15-2	15	TVSGGSISsgDYYWS	BBBLEBAABAABBBB
F	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV4-30-4*01	88.9	H2	9	H2-9-1	12	YIYYSGSTD	BBBAALBBB
F	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV4-30-4*01	100.0	H3	13	H3-13-*	-1	ARVSIFGVGTFDY	BBBBAABALBBAB
F	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV4-30-4*01	100.0	H4	8	H4-8-1	11	VDTSKNQF	BBAAALBB
G	kappa	Homo.sapiens	Hu_IGKV3D-11*02	97.1	Hu_IGKV3D-11*02	100.0	L1	11	L1-11-1	9	RASQSVSSYLA	BBABBAEABBB
G	kappa	Homo.sapiens	Hu_IGKV3D-11*02	97.1	Hu_IGKV3D-11*02	100.0	L2	8	L2-8-1	9	YDASNRAT	BLLABBBB
G	kappa	Homo.sapiens	Hu_IGKV3D-11*02	97.1	Hu_IGKV3D-11*02	14.3	L3	9	L3-9-cis7-1	8	HQYGSTPLT	BBAABBbBB
G	kappa	Homo.sapiens	Hu_IGKV3D-11*02	97.1	Hu_IGKV3D-11*02	83.3	L4	6	L4-6-1	8	GSGTDF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV4-30-4*01	100.0	H1	15	H1-15-2	22	TVSGGSISsgDYYWS	BBBLEBABBAABBBB
H	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV4-30-4*01	88.9	H2	9	H2-9-1	15	YIYYSGSTD	BBBAALBBB
H	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV4-30-4*01	100.0	H3	13	H3-13-*	-1	ARVSIFGVGTFDY	BBBBAABALBBAB
H	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV4-30-4*01	100.0	H4	8	H4-8-1	14	VDTSKNQF	BBAAALBB
J	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV4-30-4*01	100.0	H1	15	H1-15-2	11	TVSGGSISsgDYYWS	BBBLEBAABAABBBB
J	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV4-30-4*01	88.9	H2	9	H2-9-1	16	YIYYSGSTD	BBBAALBBB
J	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV4-30-4*01	100.0	H3	13	H3-13-*	-1	ARVSIFGVGTFDY	BBBBAABALBBAB
J	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV4-30-4*01	100.0	H4	8	H4-8-1	11	VDTSKNQF	BBAAALBB
K	kappa	Homo.sapiens	Hu_IGKV3D-11*02	97.1	Hu_IGKV3D-11*02	100.0	L1	11	L1-11-1	10	RASQSVSSYLA	BBABBAEABBB
K	kappa	Homo.sapiens	Hu_IGKV3D-11*02	97.1	Hu_IGKV3D-11*02	100.0	L2	8	L2-8-1	4	YDASNRAT	BLLABBBB
K	kappa	Homo.sapiens	Hu_IGKV3D-11*02	97.1	Hu_IGKV3D-11*02	14.3	L3	9	L3-9-cis7-1	5	HQYGSTPLT	BBAABBbBB
K	kappa	Homo.sapiens	Hu_IGKV3D-11*02	97.1	Hu_IGKV3D-11*02	83.3	L4	6	L4-6-1	6	GSGTDF	EBEABB
L	kappa	Homo.sapiens	Hu_IGKV3D-11*02	97.1	Hu_IGKV3D-11*02	100.0	L1	11	L1-11-1	6	RASQSVSSYLA	BBABBAEABBB
L	kappa	Homo.sapiens	Hu_IGKV3D-11*02	97.1	Hu_IGKV3D-11*02	100.0	L2	8	L2-8-*	-1	YDASNRAT	BLLeBBBB
L	kappa	Homo.sapiens	Hu_IGKV3D-11*02	97.1	Hu_IGKV3D-11*02	14.3	L3	9	L3-9-cis7-1	8	HQYGSTPLT	BBAABBbBB
L	kappa	Homo.sapiens	Hu_IGKV3D-11*02	97.1	Hu_IGKV3D-11*02	83.3	L4	6	L4-6-1	6	GSGTDF	EBEABB
N	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV4-30-4*01	100.0	H1	15	H1-15-2	11	TVSGGSISsgDYYWS	BBBLEBAABAABBBB
N	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV4-30-4*01	88.9	H2	9	H2-9-1	14	YIYYSGSTD	BBBAALBBB
N	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV4-30-4*01	100.0	H3	13	H3-13-*	-1	ARVSIFGVGTFDY	BBBBAABALBBAB
N	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV4-30-4*01	100.0	H4	8	H4-8-1	13	VDTSKNQF	BBAAALBB
O	kappa	Homo.sapiens	Hu_IGKV3D-11*02	97.1	Hu_IGKV3D-11*02	100.0	L1	11	L1-11-1	7	RASQSVSSYLA	BBABBAEABBB
O	kappa	Homo.sapiens	Hu_IGKV3D-11*02	97.1	Hu_IGKV3D-11*02	100.0	L2	8	L2-8-1	8	YDASNRAT	BLLABBBB
O	kappa	Homo.sapiens	Hu_IGKV3D-11*02	97.1	Hu_IGKV3D-11*02	14.3	L3	9	L3-9-cis7-1	7	HQYGSTPLT	BBAABBbBB
O	kappa	Homo.sapiens	Hu_IGKV3D-11*02	97.1	Hu_IGKV3D-11*02	83.3	L4	6	L4-6-1	8	GSGTDF	EBEABB
Q	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV4-30-4*01	100.0	H1	15	H1-15-2	20	TVSGGSISsgDYYWS	BBBLEBABBAABBBB
Q	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV4-30-4*01	88.9	H2	9	H2-9-1	14	YIYYSGSTD	BBBAALBBB
Q	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV4-30-4*01	100.0	H3	13	H3-13-*	-1	ARVSIFGVGTFDY	BBBBAABALBBAB
Q	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV4-30-4*01	100.0	H4	8	H4-8-1	10	VDTSKNQF	BBAAALBB
R	kappa	Homo.sapiens	Hu_IGKV3D-11*02	97.1	Hu_IGKV3D-11*02	100.0	L1	11	L1-11-1	9	RASQSVSSYLA	BBABBAEABBB
R	kappa	Homo.sapiens	Hu_IGKV3D-11*02	97.1	Hu_IGKV3D-11*02	100.0	L2	8	L2-8-1	4	YDASNRAT	BLLABBBB
R	kappa	Homo.sapiens	Hu_IGKV3D-11*02	97.1	Hu_IGKV3D-11*02	14.3	L3	9	L3-9-cis7-1	8	HQYGSTPLT	BBAABBbBB
R	kappa	Homo.sapiens	Hu_IGKV3D-11*02	97.1	Hu_IGKV3D-11*02	83.3	L4	6	L4-6-1	8	GSGTDF	EBEABB
T	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV4-30-4*01	100.0	H1	15	H1-15-*	-1	TVSGGSISsgDYYWS	BBBLEBABBAABBBB
T	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV4-30-4*01	88.9	H2	9	H2-9-1	14	YIYYSGSTD	BBBAALBBB
T	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV4-30-4*01	100.0	H3	13	H3-13-*	-1	ARVSIFGVGTFDY	BBBBAABALBBAB
T	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV4-30-4*01	100.0	H4	8	H4-8-1	19	VDTSKNQF	BBAAALBB
U	kappa	Homo.sapiens	Hu_IGKV3D-11*02	97.1	Hu_IGKV3D-11*02	100.0	L1	11	L1-11-1	10	RASQSVSSYLA	BBABBAEABBB
U	kappa	Homo.sapiens	Hu_IGKV3D-11*02	97.1	Hu_IGKV3D-11*02	100.0	L2	8	L2-8-1	8	YDASNRAT	BLLABBBB
U	kappa	Homo.sapiens	Hu_IGKV3D-11*02	97.1	Hu_IGKV3D-11*02	14.3	L3	9	L3-9-cis7-1	11	HQYGSTPLT	BBAABBbBB
U	kappa	Homo.sapiens	Hu_IGKV3D-11*02	97.1	Hu_IGKV3D-11*02	83.3	L4	6	L4-6-1	7	GSGTDF	EBEABB
W	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV4-30-4*01	100.0	H1	15	H1-15-2	13	TVSGGSISsgDYYWS	BBBLEBAABAABBBB
W	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV4-30-4*01	88.9	H2	9	H2-9-1	17	YIYYSGSTD	BBBAALBBB
W	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV4-30-4*01	100.0	H3	13	H3-13-*	-1	ARVSIFGVGTFDY	BBBBAABALBBAB
W	heavy	Homo.sapiens	Hu_IGHV4-30-4*01	95.9	Hu_IGHV4-30-4*01	100.0	H4	8	H4-8-1	14	VDTSKNQF	BBAAALBB
X	kappa	Homo.sapiens	Hu_IGKV3D-11*02	97.1	Hu_IGKV3D-11*02	100.0	L1	11	L1-11-1	9	RASQSVSSYLA	BBABBAEABBB
X	kappa	Homo.sapiens	Hu_IGKV3D-11*02	97.1	Hu_IGKV3D-11*02	100.0	L2	8	L2-8-1	7	YDASNRAT	BLLABBBB
X	kappa	Homo.sapiens	Hu_IGKV3D-11*02	97.1	Hu_IGKV3D-11*02	14.3	L3	9	L3-9-cis7-1	9	HQYGSTPLT	BBAABBbBB
X	kappa	Homo.sapiens	Hu_IGKV3D-11*02	97.1	Hu_IGKV3D-11*02	83.3	L4	6	L4-6-1	19	GSGTDF	EEEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022