PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3AUV

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV3-23*04	93.2	Hu_IGHV3-23*04	61.5	H1	13	H1-13-1	10	AASGFTISDYWIH	BBBLBBAAABBBB
A	heavy	Homo.sapiens	Hu_IGHV3-23*04	93.2	Hu_IGHV3-23*04	50.0	H2	10	H2-10-4	9	GITPAGGYTY	BBBBLLABBB
A	heavy	Homo.sapiens	Hu_IGHV3-23*04	93.2	Hu_IGHV3-23*04	50.0	H3	13	H3-13-*	-1	ARFVFFLPYAMDY	BBBBABBaLBBAB
A	heavy	Homo.sapiens	Hu_IGHV3-23*04	93.2	Hu_IGHV3-23*04	62.5	H4	8	H4-8-1	9	ADTSKNTA	BBAAALBB
A	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	45.5	L1	11	L1-11-1	4	RASQDVSTAVA	BBABBAEABBB
A	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	62.5	L2	8	L2-8-1	8	YSASFLYS	BLEABBBB
A	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	71.4	L3	9	L3-9-cis7-1	18	QQHYTTPPT	BBAABBbBB
A	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	5	GSGTDF	EBEABB
B	heavy	Homo.sapiens	Hu_IGHV3-23*04	93.2	Hu_IGHV3-23*04	61.5	H1	13	H1-13-1	10	AASGFTISDYWIH	BBBLBBAAABBBB
B	heavy	Homo.sapiens	Hu_IGHV3-23*04	93.2	Hu_IGHV3-23*04	50.0	H2	10	H2-10-4	8	GITPAGGYTY	BBBBLLABBB
B	heavy	Homo.sapiens	Hu_IGHV3-23*04	93.2	Hu_IGHV3-23*04	50.0	H3	13	H3-13-*	-1	ARFVFFLPYAMDY	BBBBABBaLBBAB
B	heavy	Homo.sapiens	Hu_IGHV3-23*04	93.2	Hu_IGHV3-23*04	62.5	H4	8	H4-8-1	9	ADTSKNTA	BBAAALBB
B	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	45.5	L1	11	L1-11-1	4	RASQDVSTAVA	BBABBAEABBB
B	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	62.5	L2	8	L2-8-1	9	YSASFLYS	BLEABBBB
B	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	71.4	L3	9	L3-9-cis7-1	17	QQHYTTPPT	BBAABBbBB
B	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	5	GSGTDF	EBEABB
C	heavy	Homo.sapiens	Hu_IGHV3-23*04	93.2	Hu_IGHV3-23*04	61.5	H1	13	H1-13-1	9	AASGFTISDYWIH	BBBLBBAAABBBB
C	heavy	Homo.sapiens	Hu_IGHV3-23*04	93.2	Hu_IGHV3-23*04	50.0	H2	10	H2-10-4	9	GITPAGGYTY	BBBBLLABBB
C	heavy	Homo.sapiens	Hu_IGHV3-23*04	93.2	Hu_IGHV3-23*04	50.0	H3	13	H3-13-*	-1	ARFVFFLPYAMDY	BBBBABBaLBBAB
C	heavy	Homo.sapiens	Hu_IGHV3-23*04	93.2	Hu_IGHV3-23*04	62.5	H4	8	H4-8-1	8	ADTSKNTA	BBAAALBB
C	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	45.5	L1	11	L1-11-1	4	RASQDVSTAVA	BBABBAEABBB
C	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	62.5	L2	8	L2-8-1	9	YSASFLYS	BLEABBBB
C	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	71.4	L3	9	L3-9-cis7-1	18	QQHYTTPPT	BBAABBbBB
C	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB
D	heavy	Homo.sapiens	Hu_IGHV3-23*04	93.2	Hu_IGHV3-23*04	61.5	H1	13	H1-13-1	10	AASGFTISDYWIH	BBBLBBAAABBBB
D	heavy	Homo.sapiens	Hu_IGHV3-23*04	93.2	Hu_IGHV3-23*04	50.0	H2	10	H2-10-4	8	GITPAGGYTY	BBBBLLABBB
D	heavy	Homo.sapiens	Hu_IGHV3-23*04	93.2	Hu_IGHV3-23*04	50.0	H3	13	H3-13-*	-1	ARFVFFLPYAMDY	BBBBABBaLBBAB
D	heavy	Homo.sapiens	Hu_IGHV3-23*04	93.2	Hu_IGHV3-23*04	62.5	H4	8	H4-8-1	10	ADTSKNTA	BBAAALBB
D	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	45.5	L1	11	L1-11-1	4	RASQDVSTAVA	BBABBAEABBB
D	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	62.5	L2	8	L2-8-1	8	YSASFLYS	BLEABBBB
D	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	71.4	L3	9	L3-9-cis7-1	17	QQHYTTPPT	BBAABBbBB
D	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	5	GSGTDF	EBEABB
E	heavy	Homo.sapiens	Hu_IGHV3-23*04	93.2	Hu_IGHV3-23*04	61.5	H1	13	H1-13-1	9	AASGFTISDYWIH	BBBLBBAAABBBB
E	heavy	Homo.sapiens	Hu_IGHV3-23*04	93.2	Hu_IGHV3-23*04	50.0	H2	10	H2-10-4	8	GITPAGGYTY	BBBBLLABBB
E	heavy	Homo.sapiens	Hu_IGHV3-23*04	93.2	Hu_IGHV3-23*04	50.0	H3	13	H3-13-*	-1	ARFVFFLPYAMDY	BBBBABBaLBBAB
E	heavy	Homo.sapiens	Hu_IGHV3-23*04	93.2	Hu_IGHV3-23*04	62.5	H4	8	H4-8-1	8	ADTSKNTA	BBAAALBB
E	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	45.5	L1	11	L1-11-1	3	RASQDVSTAVA	BBABBAEABBB
E	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	62.5	L2	8	L2-8-1	9	YSASFLYS	BLEABBBB
E	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	71.4	L3	9	L3-9-cis7-1	18	QQHYTTPPT	BBAABBbBB
E	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB
F	heavy	Homo.sapiens	Hu_IGHV3-23*04	93.2	Hu_IGHV3-23*04	61.5	H1	13	H1-13-1	9	AASGFTISDYWIH	BBBLBBAAABBBB
F	heavy	Homo.sapiens	Hu_IGHV3-23*04	93.2	Hu_IGHV3-23*04	50.0	H2	10	H2-10-4	9	GITPAGGYTY	BBBBLLABBB
F	heavy	Homo.sapiens	Hu_IGHV3-23*04	93.2	Hu_IGHV3-23*04	50.0	H3	13	H3-13-*	-1	ARFVFFLPYAMDY	BBBBABBaLBBAB
F	heavy	Homo.sapiens	Hu_IGHV3-23*04	93.2	Hu_IGHV3-23*04	62.5	H4	8	H4-8-1	8	ADTSKNTA	BBAAALBB
F	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	45.5	L1	11	L1-11-1	3	RASQDVSTAVA	BBABBAEABBB
F	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	62.5	L2	8	L2-8-1	8	YSASFLYS	BLEABBBB
F	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	71.4	L3	9	L3-9-cis7-1	18	QQHYTTPPT	BBAABBbBB
F	kappa	Homo.sapiens	Hu_IGKV1-39*01	100.0	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	4	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022