PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 3AB0

#CDRs = 8; #Clusters = 10.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
B	heavy	Mus.musculus	Mo_IGHV5-6-5*01	95.9	Mo_IGHV5-6-5*01	92.3	H1	13	H1-13-1	12	SASGFTFSSYAMS	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV5-6-5*01	95.9	Mo_IGHV5-6-5*01	66.7	H2	9	H2-9-1	11	SISTGGDTH	BBBAALBBB
B	heavy	Mus.musculus	Mo_IGHV5-6-5*01	95.9	Mo_IGHV5-6-5*01	100.0	H3	10	H3-10-2	17	ARNRGWYFDV	BBBBEABBAB
B	heavy	Mus.musculus	Mo_IGHV5-6-5*01	95.9	Mo_IGHV5-6-5*01	100.0	H4	8	H4-8-1	13	RDNARNIL	BBAAALBB
C	kappa	Mus.musculus	Mo_IGKV4-61*01	98.6	Mo_IGKV4-61*01	90.0	L1	10	L1-10-1	14	SARSSVSYMY	BBABBBABBB
C	kappa	Mus.musculus	Mo_IGKV4-61*01	98.6	Mo_IGKV4-61*01	100.0	L2	8	L2-8-1	14	YRTSNLAS	BLEABBBB
C	kappa	Mus.musculus	Mo_IGKV4-61*01	98.6	Mo_IGKV4-61*01	100.0	L3	9	L3-9-cis7-1	22	QQYHSYPPT	BBAABBbBB
C	kappa	Mus.musculus	Mo_IGKV4-61*01	98.6	Mo_IGKV4-61*01	100.0	L4	6	L4-6-2	21	GSGTSY	BBEABB
E	heavy	Mus.musculus	Mo_IGHV5-6-5*01	95.9	Mo_IGHV5-6-5*01	92.3	H1	13	H1-13-1	9	SASGFTFSSYAMS	BBBLBBAAABBBB
E	heavy	Mus.musculus	Mo_IGHV5-6-5*01	95.9	Mo_IGHV5-6-5*01	66.7	H2	9	H2-9-1	14	SISTGGDTH	BBBAALBBB
E	heavy	Mus.musculus	Mo_IGHV5-6-5*01	95.9	Mo_IGHV5-6-5*01	100.0	H3	10	H3-10-2	17	ARNRGWYFDV	BBBBEABBAB
E	heavy	Mus.musculus	Mo_IGHV5-6-5*01	95.9	Mo_IGHV5-6-5*01	100.0	H4	8	H4-8-1	13	RDNARNIL	BBAAALBB
F	kappa	Mus.musculus	Mo_IGKV4-61*01	98.6	Mo_IGKV4-61*01	90.0	L1	10	L1-10-1	14	SARSSVSYMY	BBABBBABBB
F	kappa	Mus.musculus	Mo_IGKV4-61*01	98.6	Mo_IGKV4-61*01	100.0	L2	8	L2-8-*	-1	YRTSNLAS	BEAABBBA
F	kappa	Mus.musculus	Mo_IGKV4-61*01	98.6	Mo_IGKV4-61*01	100.0	L3	9	L3-9-cis7-1	25	QQYHSYPPT	BBAABBbBB
F	kappa	Mus.musculus	Mo_IGKV4-61*01	98.6	Mo_IGKV4-61*01	100.0	L4	6	L4-6-1	13	GSGTSY	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022