PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 2XKN

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV10-96*01	98.6	Mo_IGKV10-96*01	100.0	L1	11	L1-11-2	5	RASQDISNYLN	BBABBALLBBB
A	kappa	Mus.musculus	Mo_IGKV10-96*01	98.6	Mo_IGKV10-96*01	100.0	L2	8	L2-8-1	5	YYTSRLHS	BLEABBBB
A	kappa	Mus.musculus	Mo_IGKV10-96*01	98.6	Mo_IGKV10-96*01	100.0	L3	9	L3-9-cis7-1	9	QQGNTLPWT	BBAABBbBB
A	kappa	Mus.musculus	Mo_IGKV10-96*01	98.6	Mo_IGKV10-96*01	100.0	L4	6	L4-6-1	9	GSGTDY	EBEABB
B	heavy	Mus.musculus	Mo_IGHV5-9-1*01	97.3	Mo_IGHV5-9-1*01	92.3	H1	13	H1-13-1	7	AASGFTFSRYAMS	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV5-9-1*01	97.3	Mo_IGHV5-9-1*01	90.0	H2	10	H2-10-2	6	TISSGGSYSY	BBBAALABBB
B	heavy	Mus.musculus	Mo_IGHV5-9-1*01	97.3	Mo_IGHV5-9-1*01	100.0	H3	9	H3-9-*	-1	ARDSGGFAY	BBBBEBBBL
B	heavy	Mus.musculus	Mo_IGHV5-9-1*01	97.3	Mo_IGHV5-9-1*01	87.5	H4	8	H4-8-1	17	RDNVKNTL	BBAAALBB
C	kappa	Mus.musculus	Mo_IGKV10-96*01	98.6	Mo_IGKV10-96*01	100.0	L1	11	L1-11-2	5	RASQDISNYLN	BBABBALLBBB
C	kappa	Mus.musculus	Mo_IGKV10-96*01	98.6	Mo_IGKV10-96*01	100.0	L2	8	L2-8-1	5	YYTSRLHS	BLLABBBB
C	kappa	Mus.musculus	Mo_IGKV10-96*01	98.6	Mo_IGKV10-96*01	100.0	L3	9	L3-9-cis7-1	9	QQGNTLPWT	BBAABBbBB
C	kappa	Mus.musculus	Mo_IGKV10-96*01	98.6	Mo_IGKV10-96*01	100.0	L4	6	L4-6-1	9	GSGTDY	EBEABB
D	heavy	Mus.musculus	Mo_IGHV5-9-1*01	97.3	Mo_IGHV5-9-1*01	92.3	H1	13	H1-13-1	8	AASGFTFSRYAMS	BBBLBBAAABBBB
D	heavy	Mus.musculus	Mo_IGHV5-9-1*01	97.3	Mo_IGHV5-9-1*01	90.0	H2	10	H2-10-2	8	TISSGGSYSY	BBBAALABBB
D	heavy	Mus.musculus	Mo_IGHV5-9-1*01	97.3	Mo_IGHV5-9-1*01	100.0	H3	9	H3-9-*	-1	ARDSGGFAY	BBBBEBBAB
D	heavy	Mus.musculus	Mo_IGHV5-9-1*01	97.3	Mo_IGHV5-9-1*01	87.5	H4	8	H4-8-1	16	RDNVKNTL	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022