PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 2VXS

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H1	13	H1-13-1	11	AASGFTFSSYAMS	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H2	10	H2-10-2	13	AISGSGGSTY	BBBAALABBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	50.0	H3	11	H3-11-*	-1	ARDLIHGVTRN	BBBABBLBBAB
H	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H4	8	H4-8-1	7	RDNSKNTL	BBAAALBB
I	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H1	13	H1-13-1	12	AASGFTFSSYAMS	BBBLBBAAABBBB
I	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H2	10	H2-10-2	9	AISGSGGSTY	BBBAALABBB
I	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	50.0	H3	11	H3-11-*	-1	ARDLIHGVTRN	BBBABBLBBAB
I	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H4	8	H4-8-1	5	RDNSKNTL	BBAAALBB
J	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H1	13	H1-13-1	10	AASGFTFSSYAMS	BBBLBBAAABBBB
J	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H2	10	H2-10-2	12	AISGSGGSTY	BBBAALABBB
J	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	50.0	H3	11	H3-11-*	-1	ARDLIHGVTRN	BBBABBLBBAB
J	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H4	8	H4-8-1	7	RDNSKNTL	BBAAALBB
K	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H1	13	H1-13-1	8	AASGFTFSSYAMS	BBBLBBAAABBBB
K	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H2	10	H2-10-2	8	AISGSGGSTY	BBBAALABBB
K	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	50.0	H3	11	H3-11-*	-1	ARDLIHGVTRN	BBAEBBLBBAB
K	heavy	Homo.sapiens	Hu_IGHV3-23*01	100.0	Hu_IGHV3-23*01	100.0	H4	8	H4-8-1	9	RDNSKNTL	BBAAALBB
L	lambda	Homo.sapiens	Hu_IGLV6-57*01	98.6	Hu_IGLV6-57*01	76.9	L1	13	L1-13-2	10	TRSSGSLANYYVQ	BBABEBAAABBBB
L	lambda	Homo.sapiens	Hu_IGLV6-57*01	98.6	Hu_IGLV6-57*01	62.5	L2	8	L2-8-1	10	FANNQRPS	BLEABBBB
L	lambda	Homo.sapiens	Hu_IGLV6-57*01	98.6	Hu_IGLV6-57*01	42.9	L3	9	L3-9-3	25	QTYDPYSVV	BBBBAABBB
L	lambda	Homo.sapiens	Hu_IGLV6-57*01	98.6	Hu_IGLV6-57*01	100.0	L4	8	L4-8-1	9	idSSSNSA	BBAAALBB
M	lambda	Homo.sapiens	Hu_IGLV6-57*01	98.6	Hu_IGLV6-57*01	76.9	L1	13	L1-13-2	9	TRSSGSLANYYVQ	BBABEBAAABBBB
M	lambda	Homo.sapiens	Hu_IGLV6-57*01	98.6	Hu_IGLV6-57*01	62.5	L2	8	L2-8-1	11	FANNQRPS	BLEABBBB
M	lambda	Homo.sapiens	Hu_IGLV6-57*01	98.6	Hu_IGLV6-57*01	42.9	L3	9	L3-9-3	27	QTYDPYSVV	BBBBAABBB
M	lambda	Homo.sapiens	Hu_IGLV6-57*01	98.6	Hu_IGLV6-57*01	100.0	L4	8	L4-8-1	7	idSSSNSA	BBAAALBB
N	lambda	Homo.sapiens	Hu_IGLV6-57*01	98.6	Hu_IGLV6-57*01	76.9	L1	13	L1-13-2	7	TRSSGSLANYYVQ	BBABEBAAABBBB
N	lambda	Homo.sapiens	Hu_IGLV6-57*01	98.6	Hu_IGLV6-57*01	62.5	L2	8	L2-8-1	11	FANNQRPS	BLEABBBB
N	lambda	Homo.sapiens	Hu_IGLV6-57*01	98.6	Hu_IGLV6-57*01	42.9	L3	9	L3-9-3	25	QTYDPYSVV	BBBBAABBB
N	lambda	Homo.sapiens	Hu_IGLV6-57*01	98.6	Hu_IGLV6-57*01	100.0	L4	8	L4-8-1	11	idSSSNSA	BBAAALBB
O	lambda	Homo.sapiens	Hu_IGLV6-57*01	98.6	Hu_IGLV6-57*01	76.9	L1	13	L1-13-2	11	TRSSGSLANYYVQ	BBABEBAAABBBB
O	lambda	Homo.sapiens	Hu_IGLV6-57*01	98.6	Hu_IGLV6-57*01	62.5	L2	8	L2-8-1	11	FANNQRPS	BLEABBBB
O	lambda	Homo.sapiens	Hu_IGLV6-57*01	98.6	Hu_IGLV6-57*01	42.9	L3	9	L3-9-3	29	QTYDPYSVV	BBBBAABBB
O	lambda	Homo.sapiens	Hu_IGLV6-57*01	98.6	Hu_IGLV6-57*01	100.0	L4	8	L4-8-1	10	idSSSNSA	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022