PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 2VQ1

#CDRs = 8; #Clusters = 12.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV1-110*01	95.7	Mo_IGKV1-110*01	87.5	L1	16	L1-16-*	-1	RSSQSLvhsngNTFLQ	BBABBABBAAbBBBBB
A	kappa	Mus.musculus	Mo_IGKV1-110*01	95.7	Mo_IGKV1-110*01	100.0	L2	8	L2-8-1	10	YKVSNRFS	BLLABBBB
A	kappa	Mus.musculus	Mo_IGKV1-110*01	95.7	Mo_IGKV1-110*01	85.7	L3	9	L3-9-cis7-*	-1	SQTTHVPWT	BBAABBbBB
A	kappa	Mus.musculus	Mo_IGKV1-110*01	95.7	Mo_IGKV1-110*01	100.0	L4	6	L4-6-1	10	GSGTDF	EBEABB
B	heavy	Mus.musculus	Mo_IGHV8-8*01	88.0	CDRLenMismatch	-1.0	H1	13	H1-13-*	-1	SFSGFSLSSSAMS
B	heavy	Mus.musculus	Mo_IGHV8-8*01	88.0	Mo_IGHV8-8*01	88.9	H2	9	H2-9-1	9	HIWWNDDKY	BBBAALBBB
B	heavy	Mus.musculus	Mo_IGHV8-8*01	88.0	Mo_IGHV8-8*01	100.0	H3	10	H3-10-*	-1	ARIPGFGFDY	BBBBEaBBAB
B	heavy	Mus.musculus	Mo_IGHV8-8*01	88.0	Mo_IGHV8-8*01	75.0	H4	8	H4-8-1	5	KDSSDNQV	BBAAALBB
E	kappa	Mus.musculus	Mo_IGKV1-110*01	95.7	Mo_IGKV1-110*01	87.5	L1	16	L1-16-1	11	RSSQSLvhsngNTFLQ	BBABBABBAALBBBBB
E	kappa	Mus.musculus	Mo_IGKV1-110*01	95.7	Mo_IGKV1-110*01	100.0	L2	8	L2-8-1	6	YKVSNRFS	BLLABBBB
E	kappa	Mus.musculus	Mo_IGKV1-110*01	95.7	Mo_IGKV1-110*01	85.7	L3	9	L3-9-cis7-1	10	SQTTHVPWT	BBAABBbBB
E	kappa	Mus.musculus	Mo_IGKV1-110*01	95.7	Mo_IGKV1-110*01	100.0	L4	6	L4-6-*	-1	GSGTDF	ElEABB
F	heavy	Mus.musculus	Mo_IGHV8-8*01	88.0	CDRLenMismatch	-1.0	H1	13	H1-13-*	-1	SFSGFSLSSSAMS
F	heavy	Mus.musculus	Mo_IGHV8-8*01	88.0	Mo_IGHV8-8*01	88.9	H2	9	H2-9-1	19	HIWWNDDKY	BBBAALBBB
F	heavy	Mus.musculus	Mo_IGHV8-8*01	88.0	Mo_IGHV8-8*01	100.0	H3	10	H3-10-*	-1	ARIPGFGFDY	BBBBBEEBAB
F	heavy	Mus.musculus	Mo_IGHV8-8*01	88.0	Mo_IGHV8-8*01	75.0	H4	8	H4-8-*	-1	KDSSDNQV	BBlAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022