PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 2VL5

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Mus.musculus	Mo_IGHV1S82*01	95.1	Mo_IGHV1S82*01	92.3	H1	13	H1-13-1	9	KASGYTFTSYWMN	BBBLBBAAABBBB
A	heavy	Mus.musculus	Mo_IGHV1S82*01	95.1	Mo_IGHV1S82*01	100.0	H2	10	H2-10-1	11	MIHPSDSETR	BBBAAALBBB
A	heavy	Mus.musculus	Mo_IGHV1S82*01	95.1	Mo_IGHV1S82*01	0.0	H3	12	H3-12-3	16	ARLKPGGTWFAY	BBBBBLBABBAB
A	heavy	Mus.musculus	Mo_IGHV1S82*01	95.1	Mo_IGHV1S82*01	100.0	H4	8	H4-8-1	8	VDKSSSTA	BBAAALBB
B	kappa	Mus.musculus	Mo_IGKV3-5*01	98.6	Mo_IGKV3-5*01	86.7	L1	15	L1-15-1	6	RASKSVDSYgnsfME	BBABBABBLLBBBBB
B	kappa	Mus.musculus	Mo_IGKV3-5*01	98.6	Mo_IGKV3-5*01	100.0	L2	8	L2-8-1	6	YRASNLES	BLLABBBB
B	kappa	Mus.musculus	Mo_IGKV3-5*01	98.6	Mo_IGKV3-5*01	100.0	L3	9	L3-9-cis7-1	19	QQSNEDPYT	BBAABBbBB
B	kappa	Mus.musculus	Mo_IGKV3-5*01	98.6	Mo_IGKV3-5*01	100.0	L4	6	L4-6-1	7	GSRTDF	EBEABB
C	heavy	Mus.musculus	Mo_IGHV1S82*01	95.1	Mo_IGHV1S82*01	92.3	H1	13	H1-13-1	7	KASGYTFTSYWMN	BBBLBBAAABBBB
C	heavy	Mus.musculus	Mo_IGHV1S82*01	95.1	Mo_IGHV1S82*01	100.0	H2	10	H2-10-1	11	MIHPSDSETR	BBBAAALBBB
C	heavy	Mus.musculus	Mo_IGHV1S82*01	95.1	Mo_IGHV1S82*01	0.0	H3	12	H3-12-3	17	ARLKPGGTWFAY	BBBBBLBABBAB
C	heavy	Mus.musculus	Mo_IGHV1S82*01	95.1	Mo_IGHV1S82*01	100.0	H4	8	H4-8-1	11	VDKSSSTA	BBAAALBB
D	kappa	Mus.musculus	Mo_IGKV3-5*01	98.6	Mo_IGKV3-5*01	86.7	L1	15	L1-15-1	5	RASKSVDSYgnsfME	BBABBABBLLBBBBB
D	kappa	Mus.musculus	Mo_IGKV3-5*01	98.6	Mo_IGKV3-5*01	100.0	L2	8	L2-8-1	10	YRASNLES	BLLABBBB
D	kappa	Mus.musculus	Mo_IGKV3-5*01	98.6	Mo_IGKV3-5*01	100.0	L3	9	L3-9-cis7-1	17	QQSNEDPYT	BBAABBbBB
D	kappa	Mus.musculus	Mo_IGKV3-5*01	98.6	Mo_IGKV3-5*01	100.0	L4	6	L4-6-1	6	GSRTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022