PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 2UUD

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Mus.musculus	Mo_IGHV7-3*02	98.6	Mo_IGHV7-3*02	84.6	H1	13	H1-13-1	16	ATSGFSFTDYYMA	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV7-3*02	98.6	Mo_IGHV7-3*02	91.7	H2	12	H2-12-1	9	FIRNKanGYTTD	BBBBAAALLBBB
H	heavy	Mus.musculus	Mo_IGHV7-3*02	98.6	Mo_IGHV7-3*02	66.7	H3	12	H3-12-*	-1	ARGDYYGAWFAY	BBBBABBBABAB
H	heavy	Mus.musculus	Mo_IGHV7-3*02	98.6	Mo_IGHV7-3*02	100.0	H4	8	H4-8-1	14	RDNSQSIL	BBAAALBB
J	heavy	Mus.musculus	Mo_IGHV7-3*02	98.6	Mo_IGHV7-3*02	84.6	H1	13	H1-13-1	20	ATSGFSFTDYYMA	BBBLBBAAABBBB
J	heavy	Mus.musculus	Mo_IGHV7-3*02	98.6	Mo_IGHV7-3*02	91.7	H2	12	H2-12-1	15	FIRNKanGYTTD	EBBBAAALLBBB
J	heavy	Mus.musculus	Mo_IGHV7-3*02	98.6	Mo_IGHV7-3*02	66.7	H3	12	H3-12-*	-1	ARGDYYGAWFAY	BBBBABABABAB
J	heavy	Mus.musculus	Mo_IGHV7-3*02	98.6	Mo_IGHV7-3*02	100.0	H4	8	H4-8-1	14	RDNSQSIL	BBAAALBB
K	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	100.0	L1	16	L1-16-*	-1	RSSQSIvhsngNTYLE	BBABBABBABABBBBB
K	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	100.0	L2	8	L2-8-*	-1	YKVSNRFS	ABAABBBB
K	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	100.0	L3	9	L3-9-cis7-1	21	FQGSHVPYT	BBBABBbBB
K	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	100.0	L4	6	L4-6-1	19	GSGTDF	EBEABB
L	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	100.0	L1	16	L1-16-*	-1	RSSQSIvhsngNTYLE	BBAEBABBABABBBBB
L	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	100.0	L2	8	L2-8-*	-1	YKVSNRFS	ABAABBBB
L	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	100.0	L3	9	L3-9-cis7-1	20	FQGSHVPYT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	100.0	L4	6	L4-6-*	-1	GSGTDF	LBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022