PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 2PCP

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	93.8	L1	16	L1-16-1	18	RSSQTIvhsngNTYLE	BBABBABBAALBBBBB
A	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	87.5	L2	8	L2-8-1	15	YKVTNRFS	BLEABBBB
A	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	71.4	L3	9	L3-9-cis7-1	18	FQGTHAPYT	BBAABBbBB
A	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	100.0	L4	6	L4-6-*	-1	GSGTDF	EBLABB
B	heavy	Mus.musculus	Mo_IGHV1-34*01	93.2	Mo_IGHV1-34*01	92.3	H1	13	H1-13-1	13	KASGYTFTDYYIH	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV1-34*01	93.2	Mo_IGHV1-34*01	100.0	H2	10	H2-10-1	20	YIYPNNGGNG	BBBAAALBBB
B	heavy	Mus.musculus	Mo_IGHV1-34*01	93.2	Mo_IGHV1-34*01	50.0	H3	10	H3-10-*	-1	GRSTWDDFDY	BBBBAABBAB
B	heavy	Mus.musculus	Mo_IGHV1-34*01	93.2	Mo_IGHV1-34*01	100.0	H4	8	H4-8-1	6	VDKSSSTA	BBAAALBB
C	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	93.8	L1	16	L1-16-1	15	RSSQTIvhsngNTYLE	BBABBABBAALBBBBB
C	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	87.5	L2	8	L2-8-1	19	YKVTNRFS	BLEABBBB
C	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	71.4	L3	9	L3-9-cis7-1	14	FQGTHAPYT	BBAABBbBB
C	kappa	Mus.musculus	Mo_IGKV1-117*01	100.0	Mo_IGKV1-117*01	100.0	L4	6	L4-6-2	21	GSGTDF	BBEABB
D	heavy	Mus.musculus	Mo_IGHV1-34*01	93.2	Mo_IGHV1-34*01	92.3	H1	13	H1-13-1	14	KASGYTFTDYYIH	BBBLBBAAABBBB
D	heavy	Mus.musculus	Mo_IGHV1-34*01	93.2	Mo_IGHV1-34*01	100.0	H2	10	H2-10-1	23	YIYPNNGGNG	BBBAAALBBB
D	heavy	Mus.musculus	Mo_IGHV1-34*01	93.2	Mo_IGHV1-34*01	50.0	H3	10	H3-10-*	-1	GRSTWDDFDY	BBBBAABBAB
D	heavy	Mus.musculus	Mo_IGHV1-34*01	93.2	Mo_IGHV1-34*01	100.0	H4	8	H4-8-1	10	VDKSSSTA	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022