PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 2OTU

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	lambda	Mus.musculus	Hu_IGLV4-69*01	77.9	Hu_IGLV4-69*01	66.7	L1	12	L1-12-*	-1	TLSSQHSTYTIE	BBBAAAAABBBB
A	lambda	Mus.musculus	Hu_IGLV4-69*01	77.9	Hu_IGLV4-69*01	66.7	L2	12	L2-12-2	8	ELKKdgshSTGD	BBBAALBBBBBB
A	lambda	Mus.musculus	Hu_IGLV4-69*01	77.9	Hu_IGLV4-69*01	14.3	L3	13	L3-13-*	-1	GVGDTIKEQfvYV	BBBBBBAABBBBB
A	lambda	Mus.musculus	Hu_IGLV4-69*01	77.9	Hu_IGLV4-69*01	83.3	L4	6	L4-6-2	18	SSGADR	BBEABB
B	heavy	Mus.musculus	Hu_IGHV3-64*04	79.5	Hu_IGHV3-64*04	61.5	H1	13	H1-13-1	8	AASGFTFRDYYMY	BBBLBBAAABBBB
B	heavy	Mus.musculus	Hu_IGHV3-64*04	79.5	Hu_IGHV3-64*04	70.0	H2	10	H2-10-2	7	FISNGGGSTY	BBBAALABBB
B	heavy	Mus.musculus	Hu_IGHV3-64*04	79.5	Hu_IGHV3-64*04	100.0	H3	11	H3-11-*	-1	ARGRGYVWFAY	BBBBEABABAB
B	heavy	Mus.musculus	Hu_IGHV3-64*04	79.5	Hu_IGHV3-64*04	87.5	H4	8	H4-8-1	3	RDNAKNTL	BBAAALBB
C	lambda	Mus.musculus	Hu_IGLV4-69*01	77.9	Hu_IGLV4-69*01	66.7	L1	12	L1-12-*	-1	TLSSQHSTYTIE	BBBAAAAABBBB
C	lambda	Mus.musculus	Hu_IGLV4-69*01	77.9	Hu_IGLV4-69*01	66.7	L2	12	L2-12-2	6	ELKKdgshSTGD	BBBAALBBBBBB
C	lambda	Mus.musculus	Hu_IGLV4-69*01	77.9	Hu_IGLV4-69*01	14.3	L3	13	L3-13-*	-1	GVGDTIKEQfvYV	BBBBBBAABBBBB
C	lambda	Mus.musculus	Hu_IGLV4-69*01	77.9	Hu_IGLV4-69*01	83.3	L4	6	L4-6-2	14	SSGADR	BBEABB
D	heavy	Mus.musculus	Hu_IGHV3-64*04	79.5	Hu_IGHV3-64*04	61.5	H1	13	H1-13-1	8	AASGFTFRDYYMY	BBBLBBAAABBBB
D	heavy	Mus.musculus	Hu_IGHV3-64*04	79.5	Hu_IGHV3-64*04	70.0	H2	10	H2-10-2	7	FISNGGGSTY	BBBAALABBB
D	heavy	Mus.musculus	Hu_IGHV3-64*04	79.5	Hu_IGHV3-64*04	100.0	H3	11	H3-11-*	-1	ARGRGYVWFAY	BBBBEABABAB
D	heavy	Mus.musculus	Hu_IGHV3-64*04	79.5	Hu_IGHV3-64*04	87.5	H4	8	H4-8-1	3	RDNAKNTL	BBAAALBB
E	lambda	Mus.musculus	Hu_IGLV4-69*01	77.9	Hu_IGLV4-69*01	66.7	L1	12	L1-12-*	-1	TLSSQHSTYTIE	BBBAAAAABBBB
E	lambda	Mus.musculus	Hu_IGLV4-69*01	77.9	Hu_IGLV4-69*01	66.7	L2	12	L2-12-2	5	ELKKdgshSTGD	BBBAALBBBBBB
E	lambda	Mus.musculus	Hu_IGLV4-69*01	77.9	Hu_IGLV4-69*01	14.3	L3	13	L3-13-*	-1	GVGDTIKEQfvYV	BBBBBBAABBBBB
E	lambda	Mus.musculus	Hu_IGLV4-69*01	77.9	Hu_IGLV4-69*01	83.3	L4	6	L4-6-2	16	SSGADR	BBEABB
F	heavy	Mus.musculus	Hu_IGHV3-64*04	79.5	Hu_IGHV3-64*04	61.5	H1	13	H1-13-1	8	AASGFTFRDYYMY	BBBLBBAAABBBB
F	heavy	Mus.musculus	Hu_IGHV3-64*04	79.5	Hu_IGHV3-64*04	70.0	H2	10	H2-10-2	7	FISNGGGSTY	BBBAALABBB
F	heavy	Mus.musculus	Hu_IGHV3-64*04	79.5	Hu_IGHV3-64*04	100.0	H3	11	H3-11-*	-1	ARGRGYVWFAY	BBBBEABABAB
F	heavy	Mus.musculus	Hu_IGHV3-64*04	79.5	Hu_IGHV3-64*04	87.5	H4	8	H4-8-1	4	RDNAKNTL	BBAAALBB
G	lambda	Mus.musculus	Hu_IGLV4-69*01	77.9	Hu_IGLV4-69*01	66.7	L1	12	L1-12-*	-1	TLSSQHSTYTIE	BBBAAAAABBBB
G	lambda	Mus.musculus	Hu_IGLV4-69*01	77.9	Hu_IGLV4-69*01	66.7	L2	12	L2-12-2	5	ELKKdgshSTGD	BBBAALBBBBBB
G	lambda	Mus.musculus	Hu_IGLV4-69*01	77.9	Hu_IGLV4-69*01	14.3	L3	13	L3-13-*	-1	GVGDTIKEQfvYV	BBBBBBAABBBBB
G	lambda	Mus.musculus	Hu_IGLV4-69*01	77.9	Hu_IGLV4-69*01	83.3	L4	6	L4-6-2	16	SSGADR	BBEABB
H	heavy	Mus.musculus	Hu_IGHV3-64*04	79.5	Hu_IGHV3-64*04	61.5	H1	13	H1-13-1	8	AASGFTFRDYYMY	BBBLBBAAABBBB
H	heavy	Mus.musculus	Hu_IGHV3-64*04	79.5	Hu_IGHV3-64*04	70.0	H2	10	H2-10-2	8	FISNGGGSTY	BBBAALABBB
H	heavy	Mus.musculus	Hu_IGHV3-64*04	79.5	Hu_IGHV3-64*04	100.0	H3	11	H3-11-*	-1	ARGRGYVWFAY	BBBBEABABAB
H	heavy	Mus.musculus	Hu_IGHV3-64*04	79.5	Hu_IGHV3-64*04	87.5	H4	8	H4-8-1	4	RDNAKNTL	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022