PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 2NZ9

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.6	Mo_IGKV3-5*01	86.7	L1	15	L1-15-1	18	RASESVDSYghsfMQ	BBABBABBLLBBABB
C	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.6	Mo_IGKV3-5*01	87.5	L2	8	L2-8-1	13	YRASNLEP	BLLABBBB
C	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.6	Hu_IGKV3-11*01	42.9	L3	9	L3-9-cis7-1	14	QQGNEVPFT	BBAABBbBB
C	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.6	Hu_IGKV3-11*01	100.0	L4	6	L4-6-1	25	GSGTDF	EEEABB
D	heavy	Homo.sapiens	Hu_IGHV3-30*02	91.8	Mo_IGHV5-4*02	92.3	H1	13	H1-13-1	15	AASGFTFSDHYMY	BBBLBBAAABBBB
D	heavy	Homo.sapiens	Hu_IGHV3-30*02	91.8	Mo_IGHV5-4*02	100.0	H2	10	H2-10-2	12	TISDGGSYTY	BBBAALABBB
D	heavy	Homo.sapiens	Hu_IGHV3-30*02	91.8	Hu_IGHV3-30*02	0.0	H3	11	H3-11-*	-1	SRYRYDDAMDY	BBBBBbABBAB
D	heavy	Homo.sapiens	Hu_IGHV3-30*02	91.8	Hu_IGHV3-30*02	100.0	H4	8	H4-8-1	11	RDNSKNTL	BBAAALBB
E	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.6	Mo_IGKV3-5*01	86.7	L1	15	L1-15-1	19	RASESVDSYghsfMQ	BBABBABBLLBBABB
E	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.6	Mo_IGKV3-5*01	87.5	L2	8	L2-8-1	18	YRASNLEP	BLLABBBB
E	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.6	Hu_IGKV3-11*01	42.9	L3	9	L3-9-cis7-1	16	QQGNEVPFT	BBAABBbBB
E	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.6	Hu_IGKV3-11*01	100.0	L4	6	L4-6-1	18	GSGTDF	EEEABB
F	heavy	Homo.sapiens	Hu_IGHV3-30*02	91.8	Mo_IGHV5-4*02	92.3	H1	13	H1-13-1	13	AASGFTFSDHYMY	BBBLBBAAABBBB
F	heavy	Homo.sapiens	Hu_IGHV3-30*02	91.8	Mo_IGHV5-4*02	100.0	H2	10	H2-10-2	12	TISDGGSYTY	BBBAALABBB
F	heavy	Homo.sapiens	Hu_IGHV3-30*02	91.8	Hu_IGHV3-30*02	0.0	H3	11	H3-11-*	-1	SRYRYDDAMDY	BBBBBbABBAB
F	heavy	Homo.sapiens	Hu_IGHV3-30*02	91.8	Hu_IGHV3-30*02	100.0	H4	8	H4-8-1	6	RDNSKNTL	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022