PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 2JIX

#CDRs = 8; #Clusters = 10.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Homo.sapiens	Hu_IGKV1-17*01	98.6	Hu_IGKV1-17*01	100.0	L1	11	L1-11-2	23	RASQGIRNDLG	BBABBAELABB
A	kappa	Homo.sapiens	Hu_IGKV1-17*01	98.6	Hu_IGKV1-17*01	100.0	L2	8	L2-8-1	6	YAASSLQS	BLLABBBB
A	kappa	Homo.sapiens	Hu_IGKV1-17*01	98.6	Hu_IGKV1-17*01	85.7	L3	9	L3-9-cis7-1	19	LQHNTYPPT	BBAABBbBB
A	kappa	Homo.sapiens	Hu_IGKV1-17*01	98.6	Hu_IGKV1-17*01	100.0	L4	6	L4-6-1	13	GSGTEF	EBEABB
D	heavy	Homo.sapiens	Hu_IGHV4-59*01	98.6	Hu_IGHV4-59*01	92.3	H1	13	H1-13-1	23	TVSGASISSYYWS	BBBLEBAAABBBB
D	heavy	Homo.sapiens	Hu_IGHV4-59*01	98.6	Hu_IGHV4-59*01	66.7	H2	9	H2-9-*	-1	YIGGEGSTN	BBBAALBEB
D	heavy	Homo.sapiens	Hu_IGHV4-59*01	98.6	Hu_IGHV4-59*01	100.0	H3	10	H3-10-*	-1	ARERLGIGDY	BBBBBLLBEB
D	heavy	Homo.sapiens	Hu_IGHV4-59*01	98.6	Hu_IGHV4-59*01	100.0	H4	8	H4-8-1	20	VDTSKNQF	BBAAALBB
F	heavy	Homo.sapiens	Hu_IGHV4-59*01	98.6	Hu_IGHV4-59*01	92.3	H1	13	H1-13-*	-1	TVSGASISSYYWS	BBBEBBAAABBBB
F	heavy	Homo.sapiens	Hu_IGHV4-59*01	98.6	Hu_IGHV4-59*01	66.7	H2	9	H2-9-1	23	YIGGEGSTN	BBBAALBBB
F	heavy	Homo.sapiens	Hu_IGHV4-59*01	98.6	Hu_IGHV4-59*01	100.0	H3	10	H3-10-*	-1	ARERLGIGDY	BBBBEAALLB
F	heavy	Homo.sapiens	Hu_IGHV4-59*01	98.6	Hu_IGHV4-59*01	100.0	H4	8	H4-8-1	20	VDTSKNQF	BBAAALBB
G	kappa	Homo.sapiens	Hu_IGKV1-17*01	98.6	Hu_IGKV1-17*01	100.0	L1	11	L1-11-2	16	RASQGIRNDLG	BBABBALLBBB
G	kappa	Homo.sapiens	Hu_IGKV1-17*01	98.6	Hu_IGKV1-17*01	100.0	L2	8	L2-8-1	12	YAASSLQS	BLLABBBB
G	kappa	Homo.sapiens	Hu_IGKV1-17*01	98.6	Hu_IGKV1-17*01	85.7	L3	9	L3-9-cis7-1	13	LQHNTYPPT	BBAABBbBB
G	kappa	Homo.sapiens	Hu_IGKV1-17*01	98.6	Hu_IGKV1-17*01	100.0	L4	6	L4-6-1	18	GSGTEF	EEEABB
H	heavy	Homo.sapiens	Hu_IGHV4-59*01	98.6	Hu_IGHV4-59*01	92.3	H1	13	H1-13-1	15	TVSGASISSYYWS	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV4-59*01	98.6	Hu_IGHV4-59*01	66.7	H2	9	H2-9-1	13	YIGGEGSTN	BBBAALBBB
H	heavy	Homo.sapiens	Hu_IGHV4-59*01	98.6	Hu_IGHV4-59*01	100.0	H3	10	H3-10-*	-1	ARERLGIGDY	BBBAALEBAB
H	heavy	Homo.sapiens	Hu_IGHV4-59*01	98.6	Hu_IGHV4-59*01	100.0	H4	8	H4-8-1	15	VDTSKNQF	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV1-17*01	98.6	Hu_IGKV1-17*01	100.0	L1	11	L1-11-2	12	RASQGIRNDLG	BBABBALLBBB
L	kappa	Homo.sapiens	Hu_IGKV1-17*01	98.6	Hu_IGKV1-17*01	100.0	L2	8	L2-8-1	13	YAASSLQS	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV1-17*01	98.6	Hu_IGKV1-17*01	85.7	L3	9	L3-9-cis7-1	23	LQHNTYPPT	BBAABBbBB
L	kappa	Homo.sapiens	Hu_IGKV1-17*01	98.6	Hu_IGKV1-17*01	100.0	L4	6	L4-6-1	10	GSGTEF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022