PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 2J5L

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
B	kappa	Mus.musculus	Mo_IGKV4-72*01	98.5	Mo_IGKV4-72*01	90.0	L1	10	L1-10-1	20	RARSSVSYMH	BBABBBABBB
B	kappa	Mus.musculus	Mo_IGKV4-72*01	98.5	Mo_IGKV4-72*01	87.5	L2	8	L2-8-1	15	HATSNLAS	BLLABBBB
B	kappa	Mus.musculus	Mo_IGKV4-72*01	98.5	Mo_IGKV4-72*01	87.5	L3	9	L3-9-cis7-1	14	QQWSSHPPT	BBAABBbBB
B	kappa	Mus.musculus	Mo_IGKV4-72*01	98.5	Mo_IGKV4-72*01	100.0	L4	6	L4-6-1	22	GSGTSY	EEEABB
C	heavy	Mus.musculus	Mo_IGHV5-4*02	97.3	Mo_IGHV5-4*02	92.3	H1	13	H1-13-1	13	AASGFIFSDYYMY	BBBLBBAAABBBB
C	heavy	Mus.musculus	Mo_IGHV5-4*02	97.3	Mo_IGHV5-4*02	90.0	H2	10	H2-10-*	-1	TISDGNSYTY	BBBBEALBBB
C	heavy	Mus.musculus	Mo_IGHV5-4*02	97.3	Mo_IGHV5-4*02	100.0	H3	16	H3-16-*	-1	ARDGPTDssGYGGFGY
C	heavy	Mus.musculus	Mo_IGHV5-4*02	97.3	Mo_IGHV5-4*02	100.0	H4	8	H4-8-1	16	RDNAKNNL	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022