PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 2I9L

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV8-21*01	97.1	Mo_IGKV8-21*01	94.1	L1	17	L1-17-1	14	KSSQTLlnsrtrKNYLA	BBABBABBAAALBBBBB
A	kappa	Mus.musculus	Mo_IGKV8-21*01	97.1	Mo_IGKV8-21*01	100.0	L2	8	L2-8-1	11	YWASTRES	BLLABBBB
A	kappa	Mus.musculus	Mo_IGKV8-21*01	97.1	Mo_IGKV8-21*01	100.0	L3	8	L3-8-1	10	KQSYNLWT	BBAABEBB
A	kappa	Mus.musculus	Mo_IGKV8-21*01	97.1	Mo_IGKV8-21*01	100.0	L4	6	L4-6-1	12	GSGTDF	EBEABB
B	heavy	Mus.musculus	Mo_IGHV1-7*01	95.9	Mo_IGHV1-7*01	92.3	H1	13	H1-13-1	10	KASGYTFTRYWMH	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV1-7*01	95.9	Mo_IGHV1-7*01	80.0	H2	10	H2-10-1	8	YINPSTGYTE	BBBAAALBBB
B	heavy	Mus.musculus	Mo_IGHV1-7*01	95.9	Mo_IGHV1-7*01	100.0	H3	12	H3-12-*	-1	ARTTVDGYDFAY	BBBBAALABBAB
B	heavy	Mus.musculus	Mo_IGHV1-7*01	95.9	Mo_IGHV1-7*01	87.5	H4	8	H4-8-1	5	ADKSSSTV	BBAAALBB
C	kappa	Mus.musculus	Mo_IGKV8-21*01	97.1	Mo_IGKV8-21*01	94.1	L1	17	L1-17-1	14	KSSQTLlnsrtrKNYLA	BBABBABBAAALBBBBB
C	kappa	Mus.musculus	Mo_IGKV8-21*01	97.1	Mo_IGKV8-21*01	100.0	L2	8	L2-8-1	10	YWASTRES	BLLABBBB
C	kappa	Mus.musculus	Mo_IGKV8-21*01	97.1	Mo_IGKV8-21*01	100.0	L3	8	L3-8-1	10	KQSYNLWT	BBAABEBB
C	kappa	Mus.musculus	Mo_IGKV8-21*01	97.1	Mo_IGKV8-21*01	100.0	L4	6	L4-6-1	12	GSGTDF	EBEABB
D	heavy	Mus.musculus	Mo_IGHV1-7*01	95.9	Mo_IGHV1-7*01	92.3	H1	13	H1-13-1	9	KASGYTFTRYWMH	BBBLBBAAABBBB
D	heavy	Mus.musculus	Mo_IGHV1-7*01	95.9	Mo_IGHV1-7*01	80.0	H2	10	H2-10-1	8	YINPSTGYTE	BBBAAALBBB
D	heavy	Mus.musculus	Mo_IGHV1-7*01	95.9	Mo_IGHV1-7*01	100.0	H3	12	H3-12-*	-1	ARTTVDGYDFAY	BBBBAALABBAB
D	heavy	Mus.musculus	Mo_IGHV1-7*01	95.9	Mo_IGHV1-7*01	87.5	H4	8	H4-8-1	5	ADKSSSTV	BBAAALBB
E	kappa	Mus.musculus	Mo_IGKV8-21*01	97.1	Mo_IGKV8-21*01	94.1	L1	17	L1-17-1	14	KSSQTLlnsrtrKNYLA	BBABBABBAAALBBBBB
E	kappa	Mus.musculus	Mo_IGKV8-21*01	97.1	Mo_IGKV8-21*01	100.0	L2	8	L2-8-1	7	YWASTRES	BLLABBBB
E	kappa	Mus.musculus	Mo_IGKV8-21*01	97.1	Mo_IGKV8-21*01	100.0	L3	8	L3-8-1	11	KQSYNLWT	BBAABEBB
E	kappa	Mus.musculus	Mo_IGKV8-21*01	97.1	Mo_IGKV8-21*01	100.0	L4	6	L4-6-1	11	GSGTDF	EBEABB
F	heavy	Mus.musculus	Mo_IGHV1-7*01	95.9	Mo_IGHV1-7*01	92.3	H1	13	H1-13-1	10	KASGYTFTRYWMH	BBBLBBAAABBBB
F	heavy	Mus.musculus	Mo_IGHV1-7*01	95.9	Mo_IGHV1-7*01	80.0	H2	10	H2-10-1	8	YINPSTGYTE	BBBAAALBBB
F	heavy	Mus.musculus	Mo_IGHV1-7*01	95.9	Mo_IGHV1-7*01	100.0	H3	12	H3-12-*	-1	ARTTVDGYDFAY	BBBBAALABBAB
F	heavy	Mus.musculus	Mo_IGHV1-7*01	95.9	Mo_IGHV1-7*01	87.5	H4	8	H4-8-1	5	ADKSSSTV	BBAAALBB
G	kappa	Mus.musculus	Mo_IGKV8-21*01	97.1	Mo_IGKV8-21*01	94.1	L1	17	L1-17-1	14	KSSQTLlnsrtrKNYLA	BBABBABBAAALBBBBB
G	kappa	Mus.musculus	Mo_IGKV8-21*01	97.1	Mo_IGKV8-21*01	100.0	L2	8	L2-8-1	10	YWASTRES	BLLABBBB
G	kappa	Mus.musculus	Mo_IGKV8-21*01	97.1	Mo_IGKV8-21*01	100.0	L3	8	L3-8-1	10	KQSYNLWT	BBAABEBB
G	kappa	Mus.musculus	Mo_IGKV8-21*01	97.1	Mo_IGKV8-21*01	100.0	L4	6	L4-6-1	12	GSGTDF	EBEABB
H	heavy	Mus.musculus	Mo_IGHV1-7*01	95.9	Mo_IGHV1-7*01	92.3	H1	13	H1-13-1	10	KASGYTFTRYWMH	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV1-7*01	95.9	Mo_IGHV1-7*01	80.0	H2	10	H2-10-1	9	YINPSTGYTE	BBBAAALBBB
H	heavy	Mus.musculus	Mo_IGHV1-7*01	95.9	Mo_IGHV1-7*01	100.0	H3	12	H3-12-*	-1	ARTTVDGYDFAY	BBBBAALABBAB
H	heavy	Mus.musculus	Mo_IGHV1-7*01	95.9	Mo_IGHV1-7*01	87.5	H4	8	H4-8-1	5	ADKSSSTV	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022