PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 2GSI

#CDRs = 8; #Clusters = 10.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV3-12*01	94.2	Mo_IGKV3-12*01	80.0	L1	15	L1-15-*	-1	GASKSVRtsgySYMD	BBABBABBBEBBBBB
A	kappa	Mus.musculus	Mo_IGKV3-12*01	94.2	Mo_IGKV3-12*01	87.5	L2	8	L2-8-1	12	YLVSNLES	BLEABBBB
A	kappa	Mus.musculus	Mo_IGKV3-12*01	94.2	Mo_IGKV3-12*01	71.4	L3	9	L3-9-cis7-1	10	SHIRELPRS	BBAABBbBB
A	kappa	Mus.musculus	Mo_IGKV3-12*01	94.2	Mo_IGKV3-12*01	100.0	L4	6	L4-6-1	15	GSGTDF	EBEABB
B	heavy	Mus.musculus	Mo_IGHV14-4*02	94.4	Mo_IGHV14-4*02	92.3	H1	13	H1-13-*	-1	TASGFNIKDYYMY	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV14-4*02	94.4	Mo_IGHV14-4*02	100.0	H2	10	H2-10-*	-1	WIDPENGDTE	BBBBAALBBB
B	heavy	Mus.musculus	Mo_IGHV14-4*02	94.4	Mo_IGHV14-4*02	100.0	H3	15	H3-15-*	-1	NAGVITmmgyqAMDY
B	heavy	Mus.musculus	Mo_IGHV14-4*02	94.4	Mo_IGHV14-4*02	100.0	H4	8	H4-8-1	14	ADTSSNTA	BBAAALBB
C	kappa	Mus.musculus	Mo_IGKV3-12*01	94.2	Mo_IGKV3-12*01	80.0	L1	15	L1-15-*	-1	GASKSVRtsgySYMD	BBABBBBBBEBBBBB
C	kappa	Mus.musculus	Mo_IGKV3-12*01	94.2	Mo_IGKV3-12*01	87.5	L2	8	L2-8-1	7	YLVSNLES	BLEABBBB
C	kappa	Mus.musculus	Mo_IGKV3-12*01	94.2	Mo_IGKV3-12*01	71.4	L3	9	L3-9-cis7-1	11	SHIRELPRS	BBAABBbBB
C	kappa	Mus.musculus	Mo_IGKV3-12*01	94.2	Mo_IGKV3-12*01	100.0	L4	6	L4-6-1	10	GSGTDF	EBEABB
D	heavy	Mus.musculus	Mo_IGHV14-4*02	94.4	Mo_IGHV14-4*02	92.3	H1	13	H1-13-1	13	TASGFNIKDYYMY	BBBLBBAAABBBB
D	heavy	Mus.musculus	Mo_IGHV14-4*02	94.4	Mo_IGHV14-4*02	100.0	H2	10	H2-10-1	13	WIDPENGDTE	BBBAAALBBB
D	heavy	Mus.musculus	Mo_IGHV14-4*02	94.4	Mo_IGHV14-4*02	100.0	H3	15	H3-15-*	-1	NAGVITmmgyQAMDY
D	heavy	Mus.musculus	Mo_IGHV14-4*02	94.4	Mo_IGHV14-4*02	100.0	H4	8	H4-8-1	9	ADTSSNTA	BBAAALBB
E	kappa	Mus.musculus	Mo_IGKV3-12*01	94.2	Mo_IGKV3-12*01	80.0	L1	15	L1-15-*	-1	GASKSVRtsgySYMD	BBABBBBAAEBBBBB
E	kappa	Mus.musculus	Mo_IGKV3-12*01	94.2	Mo_IGKV3-12*01	87.5	L2	8	L2-8-1	8	YLVSNLES	BLEABBBB
E	kappa	Mus.musculus	Mo_IGKV3-12*01	94.2	Mo_IGKV3-12*01	71.4	L3	9	L3-9-cis7-1	14	SHIRELPRS	BBAABBbBB
E	kappa	Mus.musculus	Mo_IGKV3-12*01	94.2	Mo_IGKV3-12*01	100.0	L4	6	L4-6-1	11	GSGTDF	EBEABB
F	heavy	Mus.musculus	Mo_IGHV14-4*02	94.4	Mo_IGHV14-4*02	92.3	H1	13	H1-13-1	17	TASGFNIKDYYMY	BBBLBBAAABBBB
F	heavy	Mus.musculus	Mo_IGHV14-4*02	94.4	Mo_IGHV14-4*02	100.0	H2	10	H2-10-1	12	WIDPENGDTE	BBBAAALBBB
F	heavy	Mus.musculus	Mo_IGHV14-4*02	94.4	Mo_IGHV14-4*02	100.0	H3	15	H3-15-*	-1	NAGVITmmgyqAMDY
F	heavy	Mus.musculus	Mo_IGHV14-4*02	94.4	Mo_IGHV14-4*02	100.0	H4	8	H4-8-1	13	ADTSSNTA	BBAAALBB
G	kappa	Mus.musculus	Mo_IGKV3-12*01	94.2	Mo_IGKV3-12*01	80.0	L1	15	L1-15-*	-1	GASKSVRtsgySYMD	BBABBBBBBEBBBBB
G	kappa	Mus.musculus	Mo_IGKV3-12*01	94.2	Mo_IGKV3-12*01	87.5	L2	8	L2-8-1	11	YLVSNLES	BLLABBBB
G	kappa	Mus.musculus	Mo_IGKV3-12*01	94.2	Mo_IGKV3-12*01	71.4	L3	9	L3-9-cis7-1	10	SHIRELPRS	BBAABBbBB
G	kappa	Mus.musculus	Mo_IGKV3-12*01	94.2	Mo_IGKV3-12*01	100.0	L4	6	L4-6-1	10	GSGTDF	EBEABB
H	heavy	Mus.musculus	Mo_IGHV14-4*02	94.4	Mo_IGHV14-4*02	92.3	H1	13	H1-13-1	20	TASGFNIKDYYMY	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV14-4*02	94.4	Mo_IGHV14-4*02	100.0	H2	10	H2-10-1	19	WIDPENGDTE	BBBAAALBBB
H	heavy	Mus.musculus	Mo_IGHV14-4*02	94.4	Mo_IGHV14-4*02	100.0	H3	15	H3-15-*	-1	NAGVITmMGYQAMDY
H	heavy	Mus.musculus	Mo_IGHV14-4*02	94.4	Mo_IGHV14-4*02	100.0	H4	8	H4-8-1	13	ADTSSNTA	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022