PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 2GKI

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Mus.musculus	Mo_IGHV1-14*01	98.6	Mo_IGHV1-14*01	100.0	H1	13	H1-13-1	12	KASGYTFTSYVMH	BBBLBBAAABBBB
A	heavy	Mus.musculus	Mo_IGHV1-14*01	98.6	Mo_IGHV1-14*01	90.0	H2	10	H2-10-1	15	YINPYNDGTK	BBBAAALBBB
A	heavy	Mus.musculus	Mo_IGHV1-14*01	98.6	Mo_IGHV1-14*01	100.0	H3	13	H3-13-*	-1	ARGAYKRGYAMDY	BBBBAAALLBBAB
A	heavy	Mus.musculus	Mo_IGHV1-14*01	98.6	Mo_IGHV1-14*01	100.0	H4	8	H4-8-1	11	SDKSSSTA	BBAAALBB
A	kappa	Mus.musculus	Mo_IGKV8-21*01	98.6	Mo_IGKV8-21*01	94.1	L1	17	L1-17-1	9	KSSQSLfnsrtrKNYLA	BBABBABBAAALBBBBB
A	kappa	Mus.musculus	Mo_IGKV8-21*01	98.6	Mo_IGKV8-21*01	100.0	L2	8	L2-8-1	5	YWASTRES	BLLABBBB
A	kappa	Mus.musculus	Mo_IGKV8-21*01	98.6	Mo_IGKV8-21*01	66.7	L3	9	L3-9-*	-1	KQSYYHMYT	BBBBBLBBB
A	kappa	Mus.musculus	Mo_IGKV8-21*01	98.6	Mo_IGKV8-21*01	100.0	L4	6	L4-6-1	10	GSGTDF	EBEABB
B	kappa	Mus.musculus	Mo_IGKV8-21*01	98.6	Mo_IGKV8-21*01	94.1	L1	17	L1-17-1	11	KSSQSLfnsrtrKNYLA	BBABBABBAAALBBBBB
B	kappa	Mus.musculus	Mo_IGKV8-21*01	98.6	Mo_IGKV8-21*01	100.0	L2	8	L2-8-1	10	YWASTRES	BLLABBBB
B	kappa	Mus.musculus	Mo_IGKV8-21*01	98.6	Mo_IGKV8-21*01	66.7	L3	9	L3-9-*	-1	KQSYYHMYT	BBBBBLBBB
B	kappa	Mus.musculus	Mo_IGKV8-21*01	98.6	Mo_IGKV8-21*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
B	heavy	Mus.musculus	Mo_IGHV1-14*01	98.6	Mo_IGHV1-14*01	100.0	H1	13	H1-13-1	15	KASGYTFTSYVMH	BBELBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV1-14*01	98.6	Mo_IGHV1-14*01	90.0	H2	10	H2-10-1	12	YINPYNDGTK	BBBAAALBBB
B	heavy	Mus.musculus	Mo_IGHV1-14*01	98.6	Mo_IGHV1-14*01	100.0	H3	13	H3-13-*	-1	ARGAYKRGYAMDY	BBBBAAALLBBAB
B	heavy	Mus.musculus	Mo_IGHV1-14*01	98.6	Mo_IGHV1-14*01	100.0	H4	8	H4-8-1	10	SDKSSSTA	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022