PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 2GK0

#CDRs = 8; #Clusters = 11.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV1-117*02	97.1	Mo_IGKV1-117*02	100.0	L1	16	L1-16-*	-1	RSSQSIvhsngNTYLE	BBABBABBAALBBBBB
A	kappa	Mus.musculus	Mo_IGKV1-117*02	97.1	Mo_IGKV1-117*02	87.5	L2	8	L2-8-*	-1	YKVSNRFS	ABLABBBB
A	kappa	Mus.musculus	Mo_IGKV1-117*02	97.1	Mo_IGKV1-117*02	85.7	L3	9	L3-9-cis7-1	11	FQGSHLPPT	BBAABBbBB
A	kappa	Mus.musculus	Mo_IGKV1-117*02	97.1	Mo_IGKV1-117*02	100.0	L4	6	L4-6-3	31	GSGTDF	EAAABB
B	heavy	Mus.musculus	Mo_IGHV2-9*01	97.3	Mo_IGHV2-9*01	92.3	H1	13	H1-13-*	-1	TVSGFSLTNYGVD	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV2-9*01	97.3	Mo_IGHV2-9*01	88.9	H2	9	H2-9-*	-1	VIWSGGSTN	BBBBALBBB
B	heavy	Mus.musculus	Mo_IGHV2-9*01	97.3	Mo_IGHV2-9*01	100.0	H3	15	H3-15-*	-1	AKHWGgyyipYGMDH
B	heavy	Mus.musculus	Mo_IGHV2-9*01	97.3	Mo_IGHV2-9*01	100.0	H4	8	H4-8-1	21	KDNSKSQV	EBAAALBB
H	heavy	Mus.musculus	Mo_IGHV2-9*01	97.3	Mo_IGHV2-9*01	92.3	H1	13	H1-13-1	22	TVSGFSLTNYGVD	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV2-9*01	97.3	Mo_IGHV2-9*01	88.9	H2	9	H2-9-1	22	VIWSGGSTN	BBBAALBBB
H	heavy	Mus.musculus	Mo_IGHV2-9*01	97.3	Mo_IGHV2-9*01	100.0	H3	15	H3-15-*	-1	AKHWGGYyIPYGMDH
H	heavy	Mus.musculus	Mo_IGHV2-9*01	97.3	Mo_IGHV2-9*01	100.0	H4	8	H4-8-1	19	KDNSKSQV	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV1-117*02	97.1	Mo_IGKV1-117*02	100.0	L1	16	L1-16-1	13	RSSQSIvhsngNTYLE	BBABBABBAALBBBBB
L	kappa	Mus.musculus	Mo_IGKV1-117*02	97.1	Mo_IGKV1-117*02	87.5	L2	8	L2-8-*	-1	YKVSNRFS	ABEABBBB
L	kappa	Mus.musculus	Mo_IGKV1-117*02	97.1	Mo_IGKV1-117*02	85.7	L3	9	L3-9-cis7-1	9	FQGSHLPPT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV1-117*02	97.1	Mo_IGKV1-117*02	100.0	L4	6	L4-6-3	25	GSGTDF	EAAABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022