PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 2GJJ

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Mus.musculus	Mo_IGHV1-42*01	80.8	Mo_IGHV1-42*01	84.6	H1	13	H1-13-1	10	KASGYSFTGYFIN	BBBLBBAAABBBB
A	heavy	Mus.musculus	Mo_IGHV1-42*01	80.8	Mo_IGHV1-42*01	30.0	H2	10	H2-10-1	12	HISSSYATST	BBBAAALBBB
A	heavy	Mus.musculus	Mo_IGHV1-42*01	80.8	Mo_IGHV1-42*01	50.0	H3	13	H3-13-*	-1	VRSGNYEEYAMDY	BBBBBEAAABBAB
A	heavy	Mus.musculus	Mo_IGHV1-42*01	80.8	Mo_IGHV1-42*01	87.5	H4	8	H4-8-1	5	VDTSSSTA	BBAAALBB
A	kappa	Mus.musculus	Mo_IGKV8-30*01	91.3	Mo_IGKV8-30*01	88.2	L1	17	L1-17-1	6	KSSQTLlysnnqKNYLA	BBABBABBAAALBBBBB
A	kappa	Mus.musculus	Mo_IGKV8-30*01	91.3	Mo_IGKV8-30*01	62.5	L2	8	L2-8-1	8	SWAFTRKS	BLLABBBB
A	kappa	Mus.musculus	Mo_IGKV8-30*01	91.3	Mo_IGKV8-30*01	71.4	L3	9	L3-9-cis7-1	6	QQYSNYPWT	BBAABBbBB
A	kappa	Mus.musculus	Mo_IGKV8-30*01	91.3	Mo_IGKV8-30*01	100.0	L4	6	L4-6-1	4	GSGTDF	EBEABB
B	heavy	Mus.musculus	Mo_IGHV1-42*01	80.8	Mo_IGHV1-42*01	84.6	H1	13	H1-13-1	11	KASGYSFTGYFIN	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV1-42*01	80.8	Mo_IGHV1-42*01	30.0	H2	10	H2-10-1	14	HISSSYATST	BBBAAALBBB
B	heavy	Mus.musculus	Mo_IGHV1-42*01	80.8	Mo_IGHV1-42*01	50.0	H3	13	H3-13-*	-1	VRSGNYEEYAMDY	BBBBBEAAABBAB
B	heavy	Mus.musculus	Mo_IGHV1-42*01	80.8	Mo_IGHV1-42*01	87.5	H4	8	H4-8-1	6	VDTSSSTA	BBAAALBB
B	kappa	Mus.musculus	Mo_IGKV8-30*01	91.3	Mo_IGKV8-30*01	88.2	L1	17	L1-17-1	7	KSSQTLlysnnqKNYLA	BBABBABBAAALBBBBB
B	kappa	Mus.musculus	Mo_IGKV8-30*01	91.3	Mo_IGKV8-30*01	62.5	L2	8	L2-8-1	8	SWAFTRKS	BLLABBBB
B	kappa	Mus.musculus	Mo_IGKV8-30*01	91.3	Mo_IGKV8-30*01	71.4	L3	9	L3-9-cis7-1	6	QQYSNYPWT	BBAABBbBB
B	kappa	Mus.musculus	Mo_IGKV8-30*01	91.3	Mo_IGKV8-30*01	100.0	L4	6	L4-6-1	5	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022