PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 2GFB

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV9-124*01	100.0	Mo_IGKV9-124*01	100.0	L1	11	L1-11-2	8	RASQEISGYLS	BBABBALLBBB
A	kappa	Mus.musculus	Mo_IGKV9-124*01	100.0	Mo_IGKV9-124*01	100.0	L2	8	L2-8-1	9	YAASTLDS	BLLABBBB
A	kappa	Mus.musculus	Mo_IGKV9-124*01	100.0	Mo_IGKV9-124*01	85.7	L3	9	L3-9-2	11	LQYASSPYT	BBAABABBB
A	kappa	Mus.musculus	Mo_IGKV9-124*01	100.0	Mo_IGKV9-124*01	100.0	L4	6	L4-6-2	23	RSGSDY	BBEABB
B	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100.0	H1	13	H1-13-1	12	AASGFTFSSFGMH	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100.0	H2	10	H2-10-2	10	YISSGSSTIY	BBBAALABBB
B	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100.0	H3	12	H3-12-*	-1	ARGDYYGSRGAY	BBAALBBBBBBA
B	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100.0	H4	8	H4-8-1	12	RDNPKNTL	BBAAALBB
C	kappa	Mus.musculus	Mo_IGKV9-124*01	100.0	Mo_IGKV9-124*01	100.0	L1	11	L1-11-2	8	RASQEISGYLS	BBABBALLBBB
C	kappa	Mus.musculus	Mo_IGKV9-124*01	100.0	Mo_IGKV9-124*01	100.0	L2	8	L2-8-1	9	YAASTLDS	BLLABBBB
C	kappa	Mus.musculus	Mo_IGKV9-124*01	100.0	Mo_IGKV9-124*01	85.7	L3	9	L3-9-2	11	LQYASSPYT	BBAABABBB
C	kappa	Mus.musculus	Mo_IGKV9-124*01	100.0	Mo_IGKV9-124*01	100.0	L4	6	L4-6-2	23	RSGSDY	BBEABB
D	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100.0	H1	13	H1-13-1	9	AASGFTFSSFGMH	BBBLBBAAABBBB
D	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100.0	H2	10	H2-10-2	10	YISSGSSTIY	BBBAALABBB
D	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100.0	H3	12	H3-12-*	-1	ARGDYYGSRGAY	BBAALBBBBBBA
D	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100.0	H4	8	H4-8-1	13	RDNPKNTL	BBAAALBB
E	kappa	Mus.musculus	Mo_IGKV9-124*01	100.0	Mo_IGKV9-124*01	100.0	L1	11	L1-11-2	6	RASQEISGYLS	BBABBALLBBB
E	kappa	Mus.musculus	Mo_IGKV9-124*01	100.0	Mo_IGKV9-124*01	100.0	L2	8	L2-8-1	7	YAASTLDS	BLLABBBB
E	kappa	Mus.musculus	Mo_IGKV9-124*01	100.0	Mo_IGKV9-124*01	85.7	L3	9	L3-9-2	11	LQYASSPYT	BBAABABBB
E	kappa	Mus.musculus	Mo_IGKV9-124*01	100.0	Mo_IGKV9-124*01	100.0	L4	6	L4-6-2	23	RSGSDY	BBEABB
F	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100.0	H1	13	H1-13-1	11	AASGFTFSSFGMH	BBBLBBAAABBBB
F	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100.0	H2	10	H2-10-2	9	YISSGSSTIY	BBBAALABBB
F	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100.0	H3	12	H3-12-*	-1	ARGDYYGSRGAY	BBAALBBBBBBA
F	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100.0	H4	8	H4-8-1	13	RDNPKNTL	BBAAALBB
G	kappa	Mus.musculus	Mo_IGKV9-124*01	100.0	Mo_IGKV9-124*01	100.0	L1	11	L1-11-2	9	RASQEISGYLS	BBABBALLBBB
G	kappa	Mus.musculus	Mo_IGKV9-124*01	100.0	Mo_IGKV9-124*01	100.0	L2	8	L2-8-1	10	YAASTLDS	BLLABBBB
G	kappa	Mus.musculus	Mo_IGKV9-124*01	100.0	Mo_IGKV9-124*01	85.7	L3	9	L3-9-2	10	LQYASSPYT	BBAABABBB
G	kappa	Mus.musculus	Mo_IGKV9-124*01	100.0	Mo_IGKV9-124*01	100.0	L4	6	L4-6-2	23	RSGSDY	BBEABB
H	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100.0	H1	13	H1-13-1	11	AASGFTFSSFGMH	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100.0	H2	10	H2-10-2	10	YISSGSSTIY	BBBAALABBB
H	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100.0	H3	12	H3-12-*	-1	ARGDYYGSRGAY	BBAALBBBBBBA
H	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100.0	H4	8	H4-8-1	12	RDNPKNTL	BBAAALBB
I	kappa	Mus.musculus	Mo_IGKV9-124*01	100.0	Mo_IGKV9-124*01	100.0	L1	11	L1-11-2	9	RASQEISGYLS	BBABBALLBBB
I	kappa	Mus.musculus	Mo_IGKV9-124*01	100.0	Mo_IGKV9-124*01	100.0	L2	8	L2-8-1	7	YAASTLDS	BLLABBBB
I	kappa	Mus.musculus	Mo_IGKV9-124*01	100.0	Mo_IGKV9-124*01	85.7	L3	9	L3-9-2	12	LQYASSPYT	BBAABABBB
I	kappa	Mus.musculus	Mo_IGKV9-124*01	100.0	Mo_IGKV9-124*01	100.0	L4	6	L4-6-2	24	RSGSDY	BBEABB
J	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100.0	H1	13	H1-13-1	11	AASGFTFSSFGMH	BBBLBBAAABBBB
J	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100.0	H2	10	H2-10-2	9	YISSGSSTIY	BBBAALABBB
J	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100.0	H3	12	H3-12-*	-1	ARGDYYGSRGAY	BBAALBBBBBBA
J	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100.0	H4	8	H4-8-1	10	RDNPKNTL	BBAAALBB
K	kappa	Mus.musculus	Mo_IGKV9-124*01	100.0	Mo_IGKV9-124*01	100.0	L1	11	L1-11-2	9	RASQEISGYLS	BBABBALLBBB
K	kappa	Mus.musculus	Mo_IGKV9-124*01	100.0	Mo_IGKV9-124*01	100.0	L2	8	L2-8-1	9	YAASTLDS	BLLABBBB
K	kappa	Mus.musculus	Mo_IGKV9-124*01	100.0	Mo_IGKV9-124*01	85.7	L3	9	L3-9-2	13	LQYASSPYT	BBAABABBB
K	kappa	Mus.musculus	Mo_IGKV9-124*01	100.0	Mo_IGKV9-124*01	100.0	L4	6	L4-6-2	24	RSGSDY	BBEABB
L	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100.0	H1	13	H1-13-1	11	AASGFTFSSFGMH	BBBLBBAAABBBB
L	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100.0	H2	10	H2-10-2	8	YISSGSSTIY	BBBAALABBB
L	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100.0	H3	12	H3-12-*	-1	ARGDYYGSRGAY	BBAALBBBBBBA
L	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100.0	H4	8	H4-8-1	11	RDNPKNTL	BBAAALBB
M	kappa	Mus.musculus	Mo_IGKV9-124*01	100.0	Mo_IGKV9-124*01	100.0	L1	11	L1-11-2	9	RASQEISGYLS	BBABBALLBBB
M	kappa	Mus.musculus	Mo_IGKV9-124*01	100.0	Mo_IGKV9-124*01	100.0	L2	8	L2-8-1	9	YAASTLDS	BLLABBBB
M	kappa	Mus.musculus	Mo_IGKV9-124*01	100.0	Mo_IGKV9-124*01	85.7	L3	9	L3-9-2	12	LQYASSPYT	BBAABABBB
M	kappa	Mus.musculus	Mo_IGKV9-124*01	100.0	Mo_IGKV9-124*01	100.0	L4	6	L4-6-2	26	RSGSDY	BBEABB
N	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100.0	H1	13	H1-13-1	11	AASGFTFSSFGMH	BBBLBBAAABBBB
N	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100.0	H2	10	H2-10-2	10	YISSGSSTIY	BBBAALABBB
N	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100.0	H3	12	H3-12-*	-1	ARGDYYGSRGAY	BBAALBBBBBBA
N	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100.0	H4	8	H4-8-1	12	RDNPKNTL	BBAAALBB
O	kappa	Mus.musculus	Mo_IGKV9-124*01	100.0	Mo_IGKV9-124*01	100.0	L1	11	L1-11-2	8	RASQEISGYLS	BBABBALLBBB
O	kappa	Mus.musculus	Mo_IGKV9-124*01	100.0	Mo_IGKV9-124*01	100.0	L2	8	L2-8-1	8	YAASTLDS	BLLABBBB
O	kappa	Mus.musculus	Mo_IGKV9-124*01	100.0	Mo_IGKV9-124*01	85.7	L3	9	L3-9-2	13	LQYASSPYT	BBAABABBB
O	kappa	Mus.musculus	Mo_IGKV9-124*01	100.0	Mo_IGKV9-124*01	100.0	L4	6	L4-6-2	24	RSGSDY	BBEABB
P	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100.0	H1	13	H1-13-1	11	AASGFTFSSFGMH	BBBLBBAAABBBB
P	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100.0	H2	10	H2-10-2	9	YISSGSSTIY	BBBAALABBB
P	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100.0	H3	12	H3-12-*	-1	ARGDYYGSRGAY	BBAALBBBBBBA
P	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100.0	H4	8	H4-8-1	10	RDNPKNTL	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022