PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 2G5B

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV8-21*01	95.7	Mo_IGKV8-21*01	82.4	L1	17	L1-17-1	10	KSSQSLfnsktrRNYLA	BBABBABBAAALBBBBB
A	kappa	Mus.musculus	Mo_IGKV8-21*01	95.7	Mo_IGKV8-21*01	100.0	L2	8	L2-8-1	4	YWASTRES	BLLABBBB
A	kappa	Mus.musculus	Mo_IGKV8-21*01	95.7	Mo_IGKV8-21*01	100.0	L3	8	L3-8-1	6	KQSYNLRT	BBAABEBB
A	kappa	Mus.musculus	Mo_IGKV8-21*01	95.7	Mo_IGKV8-21*01	83.3	L4	6	L4-6-1	8	GSGTEF	EBEABB
B	heavy	Mus.musculus	Mo_IGHV7-3*02	93.2	Mo_IGHV7-3*02	84.6	H1	13	H1-13-1	11	ATSGFTFIDNYMS	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV7-3*02	93.2	Mo_IGHV7-3*02	91.7	H2	12	H2-12-1	9	FIRNKvnGYTTE	BBBBAAALLBBB
B	heavy	Mus.musculus	Mo_IGHV7-3*02	93.2	Mo_IGHV7-3*02	66.7	H3	14	H3-14-*	-1	VRDNGSDYRWYFDV	BBBBABLLALBBAB
B	heavy	Mus.musculus	Mo_IGHV7-3*02	93.2	Mo_IGHV7-3*02	87.5	H4	8	H4-8-1	8	RDDSQSIL	BBAAALBB
C	kappa	Mus.musculus	Mo_IGKV8-21*01	95.7	Mo_IGKV8-21*01	82.4	L1	17	L1-17-1	10	KSSQSLfnsktrRNYLA	BBABBABBAAALBBBBB
C	kappa	Mus.musculus	Mo_IGKV8-21*01	95.7	Mo_IGKV8-21*01	100.0	L2	8	L2-8-1	5	YWASTRES	BLLABBBB
C	kappa	Mus.musculus	Mo_IGKV8-21*01	95.7	Mo_IGKV8-21*01	100.0	L3	8	L3-8-1	7	KQSYNLRT	BBAABEBB
C	kappa	Mus.musculus	Mo_IGKV8-21*01	95.7	Mo_IGKV8-21*01	83.3	L4	6	L4-6-1	5	GSGTEF	EBEABB
D	heavy	Mus.musculus	Mo_IGHV7-3*02	93.2	Mo_IGHV7-3*02	84.6	H1	13	H1-13-1	10	ATSGFTFIDNYMS	BBBLBBAAABBBB
D	heavy	Mus.musculus	Mo_IGHV7-3*02	93.2	Mo_IGHV7-3*02	91.7	H2	12	H2-12-1	9	FIRNKvnGYTTE	BBBBAAALLBBB
D	heavy	Mus.musculus	Mo_IGHV7-3*02	93.2	Mo_IGHV7-3*02	66.7	H3	14	H3-14-*	-1	VRDNGSDYRWYFDV	BBBBABLLALBBAB
D	heavy	Mus.musculus	Mo_IGHV7-3*02	93.2	Mo_IGHV7-3*02	87.5	H4	8	H4-8-1	7	RDDSQSIL	BBAAALBB
E	kappa	Mus.musculus	Mo_IGKV8-21*01	95.7	Mo_IGKV8-21*01	82.4	L1	17	L1-17-1	11	KSSQSLfnsktrRNYLA	BBABBABBAAALBBBBB
E	kappa	Mus.musculus	Mo_IGKV8-21*01	95.7	Mo_IGKV8-21*01	100.0	L2	8	L2-8-1	7	YWASTRES	BLLABBBB
E	kappa	Mus.musculus	Mo_IGKV8-21*01	95.7	Mo_IGKV8-21*01	100.0	L3	8	L3-8-1	6	KQSYNLRT	BBAABEBB
E	kappa	Mus.musculus	Mo_IGKV8-21*01	95.7	Mo_IGKV8-21*01	83.3	L4	6	L4-6-1	6	GSGTEF	EBEABB
F	heavy	Mus.musculus	Mo_IGHV7-3*02	93.2	Mo_IGHV7-3*02	84.6	H1	13	H1-13-1	13	ATSGFTFIDNYMS	BBBLBBAAABBBB
F	heavy	Mus.musculus	Mo_IGHV7-3*02	93.2	Mo_IGHV7-3*02	91.7	H2	12	H2-12-1	8	FIRNKvnGYTTE	BBBBAAALLBBB
F	heavy	Mus.musculus	Mo_IGHV7-3*02	93.2	Mo_IGHV7-3*02	66.7	H3	14	H3-14-*	-1	VRDNGSDYRWYFDV	BBBBABLLALBBAB
F	heavy	Mus.musculus	Mo_IGHV7-3*02	93.2	Mo_IGHV7-3*02	87.5	H4	8	H4-8-1	5	RDDSQSIL	BBAAALBB
G	kappa	Mus.musculus	Mo_IGKV8-21*01	95.7	Mo_IGKV8-21*01	82.4	L1	17	L1-17-1	8	KSSQSLfnsktrRNYLA	BBABBABBAAALBBBBB
G	kappa	Mus.musculus	Mo_IGKV8-21*01	95.7	Mo_IGKV8-21*01	100.0	L2	8	L2-8-1	6	YWASTRES	BLLABBBB
G	kappa	Mus.musculus	Mo_IGKV8-21*01	95.7	Mo_IGKV8-21*01	100.0	L3	8	L3-8-1	5	KQSYNLRT	BBAABEBB
G	kappa	Mus.musculus	Mo_IGKV8-21*01	95.7	Mo_IGKV8-21*01	83.3	L4	6	L4-6-1	6	GSGTEF	EBEABB
H	heavy	Mus.musculus	Mo_IGHV7-3*02	93.2	Mo_IGHV7-3*02	84.6	H1	13	H1-13-1	12	ATSGFTFIDNYMS	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV7-3*02	93.2	Mo_IGHV7-3*02	91.7	H2	12	H2-12-1	7	FIRNKvnGYTTE	BBBBAAALLBBB
H	heavy	Mus.musculus	Mo_IGHV7-3*02	93.2	Mo_IGHV7-3*02	66.7	H3	14	H3-14-*	-1	VRDNGSDYRWYFDV	BBBBABLLALBBAB
H	heavy	Mus.musculus	Mo_IGHV7-3*02	93.2	Mo_IGHV7-3*02	87.5	H4	8	H4-8-1	7	RDDSQSIL	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022