PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 2FEE

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
I	heavy	Homo.sapiens	Mo_IGHV4-1*02	94.5	Mo_IGHV4-1*02	92.3	H1	13	H1-13-4	18	AASGFDYSRYWMS	BBBLBBABLBBBB
I	heavy	Homo.sapiens	Mo_IGHV4-1*02	94.5	Mo_IGHV4-1*02	90.0	H2	10	H2-10-2	16	EINPVSSTIN	BBBAALABBB
I	heavy	Homo.sapiens	Mo_IGHV4-1*02	94.5	Mo_IGHV4-1*02	100.0	H3	14	H3-14-*	-1	ARLYYGYGYWYFDV	BBBBBAALBBBBAB
I	heavy	Homo.sapiens	Mo_IGHV4-1*02	94.5	Mo_IGHV4-1*02	87.5	H4	8	H4-8-1	8	RDNAKDTL	BBAAALBB
J	heavy	Homo.sapiens	Mo_IGHV4-1*02	94.5	Mo_IGHV4-1*02	92.3	H1	13	H1-13-4	13	AASGFDYSRYWMS	BBBLBBABLBBBB
J	heavy	Homo.sapiens	Mo_IGHV4-1*02	94.5	Mo_IGHV4-1*02	90.0	H2	10	H2-10-2	14	EINPVSSTIN	BBBAALABBB
J	heavy	Homo.sapiens	Mo_IGHV4-1*02	94.5	Mo_IGHV4-1*02	100.0	H3	14	H3-14-*	-1	ARLYYGYGYWYFDV	BBBBBAALBBBBAB
J	heavy	Homo.sapiens	Mo_IGHV4-1*02	94.5	Mo_IGHV4-1*02	87.5	H4	8	H4-8-1	10	RDNAKDTL	BBAAALBB
L	kappa	Homo.sapiens	Mo_IGKV4-59*01	91.3	Mo_IGKV4-59*01	90.0	L1	10	L1-10-*	-1	SASSSVSYIH	BBABBBBLBB
L	kappa	Homo.sapiens	Mo_IGKV4-59*01	91.3	Mo_IGKV4-59*01	87.5	L2	8	L2-8-1	9	YDTSKLTS	BLLABBBB
L	kappa	Homo.sapiens	Mo_IGKV4-59*01	91.3	Mo_IGKV4-59*01	75.0	L3	9	L3-9-cis7-1	14	QQWSSHPQT	BBAABBbBB
L	kappa	Homo.sapiens	Mo_IGKV4-59*01	91.3	Mo_IGKV4-59*01	100.0	L4	6	L4-6-1	11	GSGTSY	EEEABB
O	kappa	Homo.sapiens	Mo_IGKV4-59*01	91.3	Mo_IGKV4-59*01	90.0	L1	10	L1-10-*	-1	SASSSVSYIH	BBABBBBLBB
O	kappa	Homo.sapiens	Mo_IGKV4-59*01	91.3	Mo_IGKV4-59*01	87.5	L2	8	L2-8-1	18	YDTSKLTS	BLLLBBBB
O	kappa	Homo.sapiens	Mo_IGKV4-59*01	91.3	Mo_IGKV4-59*01	75.0	L3	9	L3-9-cis7-1	16	QQWSSHPQT	BBAABBbBB
O	kappa	Homo.sapiens	Mo_IGKV4-59*01	91.3	Mo_IGKV4-59*01	100.0	L4	6	L4-6-1	18	GSGTSY	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022