PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 2C1O

#CDRs = 8; #Clusters = 10.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV1-133*01	94.1	Mo_IGKV1-133*01	100.0	L1	16	L1-16-*	-1	KSSQSLlysngKTYLN	BBABBABBABABBBBB
A	kappa	Mus.musculus	Mo_IGKV1-133*01	94.1	Mo_IGKV1-133*01	100.0	L2	8	L2-8-1	11	YLVSKLDS	BLLABBBB
A	kappa	Mus.musculus	Mo_IGKV1-133*01	94.1	Mo_IGKV1-133*01	85.7	L3	9	L3-9-cis7-1	12	VQGSHFPPT	BBAABBbBB
A	kappa	Mus.musculus	Mo_IGKV1-133*01	94.1	Mo_IGKV1-133*01	100.0	L4	6	L4-6-1	15	GSGTDF	EBEABB
B	heavy	Mus.musculus	Mo_IGHV1S82*01	86.9	Mo_IGHV1S82*01	92.3	H1	13	H1-13-1	15	KASGYSFTNYWMN	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV1S82*01	86.9	Mo_IGHV1S82*01	100.0	H2	10	H2-10-1	12	MIHPSDSETR	BBBAAALBBB
B	heavy	Mus.musculus	Mo_IGHV1S82*01	86.9	Mo_IGHV1S82*01	0.0	H3	9	H3-9-*	-1	ARDDYDGAF	BBBBAAEBB
B	heavy	Mus.musculus	Mo_IGHV1S82*01	86.9	Mo_IGHV1S82*01	87.5	H4	8	H4-8-1	12	VDRSSSTA	BBAAALBB
H	heavy	Mus.musculus	Mo_IGHV1S82*01	86.9	Mo_IGHV1S82*01	92.3	H1	13	H1-13-*	-1	KASGYSFTNYWMN	BBBLBBBLABBBB
H	heavy	Mus.musculus	Mo_IGHV1S82*01	86.9	Mo_IGHV1S82*01	100.0	H2	10	H2-10-1	20	MIHPSDSETR	BBBAAALBBB
H	heavy	Mus.musculus	Mo_IGHV1S82*01	86.9	Mo_IGHV1S82*01	0.0	H3	9	H3-9-*	-1	ARDDYDGAF	BBBBAAEBB
H	heavy	Mus.musculus	Mo_IGHV1S82*01	86.9	Mo_IGHV1S82*01	87.5	H4	8	H4-8-1	9	VDRSSSTA	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV1-133*01	94.1	Mo_IGKV1-133*01	100.0	L1	16	L1-16-1	12	KSSQSLlysngKTYLN	BBABBABBAALBBBBB
L	kappa	Mus.musculus	Mo_IGKV1-133*01	94.1	Mo_IGKV1-133*01	100.0	L2	8	L2-8-1	7	YLVSKLDS	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV1-133*01	94.1	Mo_IGKV1-133*01	85.7	L3	9	L3-9-cis7-1	13	VQGSHFPPT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV1-133*01	94.1	Mo_IGKV1-133*01	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022