PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 2BRR

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Mus.musculus	Mo_IGHV9-3-1*01	94.4	Mo_IGHV9-3-1*01	100.0	H1	13	H1-13-1	7	KASGYTFTNYGMN	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV9-3-1*01	94.4	Mo_IGHV9-3-1*01	100.0	H2	10	H2-10-1	13	WINTYTGEPT	BBBAAALBBB
H	heavy	Mus.musculus	Mo_IGHV9-3-1*01	94.4	Mo_IGHV9-3-1*01	100.0	H3	16	H3-16-*	-1	ARDYYGSTypYYAMDY
H	heavy	Mus.musculus	Mo_IGHV9-3-1*01	94.4	Mo_IGHV9-3-1*01	87.5	H4	8	H4-8-1	8	LETSASAA	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV4-57-1*01	100.0	Mo_IGKV4-57-1*01	100.0	L1	12	L1-12-1	6	RASSSVSsSYLH	BBABBBBAAABB
L	kappa	Mus.musculus	Mo_IGKV4-57-1*01	100.0	Mo_IGKV4-57-1*01	100.0	L2	8	L2-8-1	6	YSTSNLAS	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV4-57-1*01	100.0	Mo_IGKV4-57-1*01	87.5	L3	9	L3-9-cis7-*	-1	QQYSGYPYT	BBBAEBbBB
L	kappa	Mus.musculus	Mo_IGKV4-57-1*01	100.0	Mo_IGKV4-57-1*01	100.0	L4	6	L4-6-1	9	GSGTSY	EBEABB
X	kappa	Mus.musculus	Mo_IGKV4-57-1*01	100.0	Mo_IGKV4-57-1*01	100.0	L1	12	L1-12-1	6	RASSSVSsSYLH	BBABBBBAAABB
X	kappa	Mus.musculus	Mo_IGKV4-57-1*01	100.0	Mo_IGKV4-57-1*01	100.0	L2	8	L2-8-1	5	YSTSNLAS	BLEABBBB
X	kappa	Mus.musculus	Mo_IGKV4-57-1*01	100.0	Mo_IGKV4-57-1*01	87.5	L3	9	L3-9-cis7-*	-1	QQYSGYPYT	BBBAEBbBB
X	kappa	Mus.musculus	Mo_IGKV4-57-1*01	100.0	Mo_IGKV4-57-1*01	100.0	L4	6	L4-6-1	9	GSGTSY	EBEABB
Y	heavy	Mus.musculus	Mo_IGHV9-3-1*01	94.4	Mo_IGHV9-3-1*01	100.0	H1	13	H1-13-1	7	KASGYTFTNYGMN	BBBLBBAAABBBB
Y	heavy	Mus.musculus	Mo_IGHV9-3-1*01	94.4	Mo_IGHV9-3-1*01	100.0	H2	10	H2-10-1	13	WINTYTGEPT	BBBAAALBBB
Y	heavy	Mus.musculus	Mo_IGHV9-3-1*01	94.4	Mo_IGHV9-3-1*01	100.0	H3	16	H3-16-*	-1	ARDYYGSTypYYAMDY
Y	heavy	Mus.musculus	Mo_IGHV9-3-1*01	94.4	Mo_IGHV9-3-1*01	87.5	H4	8	H4-8-1	5	LETSASAA	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022