PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 2BMK

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV4-57*01	94.2	Mo_IGKV4-57*01	70.0	L1	10	L1-10-1	10	SATSGVNYMH	BBABBBABBB
A	kappa	Mus.musculus	Mo_IGKV4-57*01	94.2	Mo_IGKV4-57*01	100.0	L2	8	L2-8-1	7	YSTSNLAS	BLLABBBB
A	kappa	Mus.musculus	Mo_IGKV4-57*01	94.2	Mo_IGKV4-57*01	75.0	L3	9	L3-9-cis7-1	10	QQRSTYPFT	BBAABBbBB
A	kappa	Mus.musculus	Mo_IGKV4-57*01	94.2	Mo_IGKV4-57*01	100.0	L4	6	L4-6-1	12	GSGTSY	EBEABB
B	heavy	Mus.musculus	Mo_IGHV7-3*02	95.9	Mo_IGHV7-3*02	100.0	H1	13	H1-13-1	14	ATSGFTFTDYYMS	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV7-3*02	95.9	Mo_IGHV7-3*02	83.3	H2	12	H2-12-1	8	LIRNKanGYTKE	BBBBAAALLBBB
B	heavy	Mus.musculus	Mo_IGHV7-3*02	95.9	Mo_IGHV7-3*02	66.7	H3	16	H3-16-*	-1	VRDKGSygNYEAWFAY
B	heavy	Mus.musculus	Mo_IGHV7-3*02	95.9	Mo_IGHV7-3*02	100.0	H4	8	H4-8-1	14	RDNSQSIL	BBAAALBB
H	heavy	Mus.musculus	Mo_IGHV7-3*02	95.9	Mo_IGHV7-3*02	100.0	H1	13	H1-13-1	12	ATSGFTFTDYYMS	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV7-3*02	95.9	Mo_IGHV7-3*02	83.3	H2	12	H2-12-1	9	LIRNKanGYTKE	BBBBAAALLBBB
H	heavy	Mus.musculus	Mo_IGHV7-3*02	95.9	Mo_IGHV7-3*02	66.7	H3	16	H3-16-*	-1	VRDKGSygNYEAWFAY
H	heavy	Mus.musculus	Mo_IGHV7-3*02	95.9	Mo_IGHV7-3*02	100.0	H4	8	H4-8-1	16	RDNSQSIL	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV4-57*01	94.2	Mo_IGKV4-57*01	70.0	L1	10	L1-10-1	8	SATSGVNYMH	BBABBBABBB
L	kappa	Mus.musculus	Mo_IGKV4-57*01	94.2	Mo_IGKV4-57*01	100.0	L2	8	L2-8-1	8	YSTSNLAS	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV4-57*01	94.2	Mo_IGKV4-57*01	75.0	L3	9	L3-9-cis7-1	8	QQRSTYPFT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV4-57*01	94.2	Mo_IGKV4-57*01	100.0	L4	6	L4-6-1	13	GSGTSY	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022