PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 2ARJ

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Rattus.norvegicus	Ra_IGKV6S5*01	82.6	Ra_IGKV6S5*01	90.9	L1	11	L1-11-1	9	KASQNVRNNIA	BBABBAEABBB
A	kappa	Rattus.norvegicus	Ra_IGKV6S5*01	82.6	Ra_IGKV6S5*01	75.0	L2	8	L2-8-1	6	YYASYRYT	BLLABBBB
A	kappa	Rattus.norvegicus	Ra_IGKV6S5*01	82.6	Ra_IGKV6S5*01	100.0	L3	9	L3-9-cis7-1	28	QRIYNSPYT	BBAABBbBB
A	kappa	Rattus.norvegicus	Ra_IGKV6S5*01	82.6	Ra_IGKV6S5*01	83.3	L4	6	L4-6-1	11	GFGTDF	EBEABB
B	heavy	Rattus.norvegicus	Ra_IGHV2-1*01	97.3	Ra_IGHV2-1*01	100.0	H1	13	H1-13-1	16	TVSGFSLTSNSVH	BBBLBBAAABBBB
B	heavy	Rattus.norvegicus	Ra_IGHV2-1*01	97.3	Ra_IGHV2-1*01	55.6	H2	9	H2-9-1	10	GIWGDGDTD	BBBAALBBB
B	heavy	Rattus.norvegicus	Ra_IGHV2-1*01	97.3	Ra_IGHV2-1*01	50.0	H3	11	H3-11-*	-1	TPLIGSWYFDF	BBBBLBABBAB
B	heavy	Rattus.norvegicus	Ra_IGHV2-1*01	97.3	Ra_IGHV2-1*01	87.5	H4	8	H4-8-1	11	RDTSKNQV	BBAAALBB
H	heavy	Rattus.norvegicus	Ra_IGHV2-1*01	97.3	Ra_IGHV2-1*01	100.0	H1	13	H1-13-1	16	TVSGFSLTSNSVH	BBBLBBAAABBBB
H	heavy	Rattus.norvegicus	Ra_IGHV2-1*01	97.3	Ra_IGHV2-1*01	55.6	H2	9	H2-9-1	10	GIWGDGDTD	BBBAALBBB
H	heavy	Rattus.norvegicus	Ra_IGHV2-1*01	97.3	Ra_IGHV2-1*01	50.0	H3	11	H3-11-*	-1	TPLIGSWYFDF	BBBBLBABBAB
H	heavy	Rattus.norvegicus	Ra_IGHV2-1*01	97.3	Ra_IGHV2-1*01	87.5	H4	8	H4-8-1	11	RDTSKNQV	BBAAALBB
L	kappa	Rattus.norvegicus	Ra_IGKV6S5*01	82.6	Ra_IGKV6S5*01	90.9	L1	11	L1-11-1	9	KASQNVRNNIA	BBABBAEABBB
L	kappa	Rattus.norvegicus	Ra_IGKV6S5*01	82.6	Ra_IGKV6S5*01	75.0	L2	8	L2-8-1	5	YYASYRYT	BLLABBBB
L	kappa	Rattus.norvegicus	Ra_IGKV6S5*01	82.6	Ra_IGKV6S5*01	100.0	L3	9	L3-9-cis7-1	27	QRIYNSPYT	BBAABBbBB
L	kappa	Rattus.norvegicus	Ra_IGKV6S5*01	82.6	Ra_IGKV6S5*01	83.3	L4	6	L4-6-1	12	GFGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022