PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1ZA3

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Homo.sapiens	Hu_IGKV1D-13*01	98.5	Hu_IGKV1D-13*01	54.5	L1	11	L1-11-1	22	RASQDVNTAVA	BBABBAEBABB
A	kappa	Homo.sapiens	Hu_IGKV1D-13*01	98.5	Hu_IGKV1D-13*01	62.5	L2	8	L2-8-*	-1	YAASYLYS	BLLABBBB
A	kappa	Homo.sapiens	Hu_IGKV1D-13*01	98.5	Hu_IGKV1D-13*01	14.3	L3	8	L3-8-*	-1	QSSSSPYT	BBAABBAB
A	kappa	Homo.sapiens	Hu_IGKV1D-13*01	98.5	Hu_IGKV1D-13*01	100.0	L4	6	L4-6-2	26	GSGTDF	BBEABB
B	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	53.8	H1	13	H1-13-1	20	AASGFSIYSYSIH	BBBLBBAAABBBB
B	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	40.0	H2	10	H2-10-1	12	SISPYSGYTS	BBBAAALBBB
B	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	0.0	H3	22	H3-22-*	-1	SRYSSYYsyyyssssYSYAMDY
B	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	62.5	H4	8	H4-8-1	13	ADTSKNTA	BBAAALBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	53.8	H1	13	H1-13-1	22	AASGFSIYSYSIH	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	40.0	H2	10	H2-10-1	13	SISPYSGYTS	BBBAAALBBB
H	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	0.0	H3	22	H3-22-*	-1	SRYSSYYsyyyssssYSYAMDY
H	heavy	Homo.sapiens	Hu_IGHV3-23*04	94.5	Hu_IGHV3-23*04	62.5	H4	8	H4-8-1	11	ADTSKNTA	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV1D-13*01	98.5	Hu_IGKV1D-13*01	54.5	L1	11	L1-11-1	18	RASQDVNTAVA	BBABBAEBABB
L	kappa	Homo.sapiens	Hu_IGKV1D-13*01	98.5	Hu_IGKV1D-13*01	62.5	L2	8	L2-8-*	-1	YAASYLYS	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV1D-13*01	98.5	Hu_IGKV1D-13*01	14.3	L3	8	L3-8-*	-1	QSSSSPYT	BBAAABBB
L	kappa	Homo.sapiens	Hu_IGKV1D-13*01	98.5	Hu_IGKV1D-13*01	100.0	L4	6	L4-6-2	33	GSGTDF	BEEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022