PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1YNT

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV10-96*01	98.6	Mo_IGKV10-96*01	100.0	L1	11	L1-11-2	24	RASQDISNYLN	BBBEBALLBBB
A	kappa	Mus.musculus	Mo_IGKV10-96*01	98.6	Mo_IGKV10-96*01	100.0	L2	8	L2-8-1	17	YYTSRLHS	BLEABBBB
A	kappa	Mus.musculus	Mo_IGKV10-96*01	98.6	Mo_IGKV10-96*01	100.0	L3	9	L3-9-cis7-*	-1	QQGNTLPYT	BBABBBbBB
A	kappa	Mus.musculus	Mo_IGKV10-96*01	98.6	Mo_IGKV10-96*01	100.0	L4	6	L4-6-1	16	GSGTDY	EBEABB
B	heavy	Mus.musculus	Mo_IGHV1S137*01	98.6	Mo_IGHV1S137*01	92.3	H1	13	H1-13-1	14	KGSGYTFTDYGMH	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV1S137*01	98.6	Mo_IGHV1S137*01	80.0	H2	10	H2-10-1	18	IISTYSGDAS	BBBAAALBBB
B	heavy	Mus.musculus	Mo_IGHV1S137*01	98.6	Mo_IGHV1S137*01	100.0	H3	11	H3-11-*	-1	ARSSTWYYFDY	BBBABAABBAB
B	heavy	Mus.musculus	Mo_IGHV1S137*01	98.6	Mo_IGHV1S137*01	100.0	H4	8	H4-8-*	-1	VDKSSSTA	BBAAALBB
C	kappa	Mus.musculus	Mo_IGKV10-96*01	98.6	Mo_IGKV10-96*01	100.0	L1	11	L1-11-2	24	RASQDISNYLN	BBAEBALLBBB
C	kappa	Mus.musculus	Mo_IGKV10-96*01	98.6	Mo_IGKV10-96*01	100.0	L2	8	L2-8-1	17	YYTSRLHS	BLLABBBB
C	kappa	Mus.musculus	Mo_IGKV10-96*01	98.6	Mo_IGKV10-96*01	100.0	L3	9	L3-9-cis7-*	-1	QQGNTLPYT	BBBBBBbBB
C	kappa	Mus.musculus	Mo_IGKV10-96*01	98.6	Mo_IGKV10-96*01	100.0	L4	6	L4-6-1	16	GSGTDY	EBEABB
D	heavy	Mus.musculus	Mo_IGHV1S137*01	98.6	Mo_IGHV1S137*01	92.3	H1	13	H1-13-1	15	KGSGYTFTDYGMH	BBBLBBAAABBBB
D	heavy	Mus.musculus	Mo_IGHV1S137*01	98.6	Mo_IGHV1S137*01	80.0	H2	10	H2-10-1	18	IISTYSGDAS	BBBAAALBBB
D	heavy	Mus.musculus	Mo_IGHV1S137*01	98.6	Mo_IGHV1S137*01	100.0	H3	11	H3-11-*	-1	ARSSTWYYFDY	BBBABAABBAB
D	heavy	Mus.musculus	Mo_IGHV1S137*01	98.6	Mo_IGHV1S137*01	100.0	H4	8	H4-8-*	-1	VDKSSSTA	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022