PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1YMH

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV8-21*01	95.7	Mo_IGKV8-21*01	100.0	L1	17	L1-17-1	16	KSSQSLlnsrtrKNYLA	BBABBABBAAALBBBBB
A	kappa	Mus.musculus	Mo_IGKV8-21*01	95.7	Mo_IGKV8-21*01	100.0	L2	8	L2-8-1	10	YWASTRES	BLLABBBB
A	kappa	Mus.musculus	Mo_IGKV8-21*01	95.7	Mo_IGKV8-21*01	50.0	L3	9	L3-9-cis7-1	11	KQAYIPPLT	BBAABBbBB
A	kappa	Mus.musculus	Mo_IGKV8-21*01	95.7	Mo_IGKV8-21*01	100.0	L4	6	L4-6-1	9	GSGTDF	EBEABB
B	heavy	Mus.musculus	Mo_IGHV9-2-1*01	95.9	Mo_IGHV9-2-1*01	92.3	H1	13	H1-13-1	16	KASGYTFTDFSMH	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV9-2-1*01	95.9	Mo_IGHV9-2-1*01	90.0	H2	10	H2-10-1	25	WVNTETGEPT	BBBAAALBBB
B	heavy	Mus.musculus	Mo_IGHV9-2-1*01	95.9	Mo_IGHV9-2-1*01	100.0	H3	11	H3-11-1	14	ARFLLRQYFDV	BBBBAALBBAB
B	heavy	Mus.musculus	Mo_IGHV9-2-1*01	95.9	Mo_IGHV9-2-1*01	100.0	H4	8	H4-8-1	15	LETSASTA	BBAAALBB
C	kappa	Mus.musculus	Mo_IGKV8-21*01	95.7	Mo_IGKV8-21*01	100.0	L1	17	L1-17-1	15	KSSQSLlnsrtrKNYLA	BBABBABBAAALBBBBB
C	kappa	Mus.musculus	Mo_IGKV8-21*01	95.7	Mo_IGKV8-21*01	100.0	L2	8	L2-8-1	10	YWASTRES	BLLABBBB
C	kappa	Mus.musculus	Mo_IGKV8-21*01	95.7	Mo_IGKV8-21*01	50.0	L3	9	L3-9-cis7-1	10	KQAYIPPLT	BBAABBbBB
C	kappa	Mus.musculus	Mo_IGKV8-21*01	95.7	Mo_IGKV8-21*01	100.0	L4	6	L4-6-1	13	GSGTDF	EBEABB
D	heavy	Mus.musculus	Mo_IGHV9-2-1*01	95.9	Mo_IGHV9-2-1*01	92.3	H1	13	H1-13-1	13	KASGYTFTDFSMH	BBBLBBAAABBBB
D	heavy	Mus.musculus	Mo_IGHV9-2-1*01	95.9	Mo_IGHV9-2-1*01	90.0	H2	10	H2-10-1	26	WVNTETGEPT	BBBAAALBBB
D	heavy	Mus.musculus	Mo_IGHV9-2-1*01	95.9	Mo_IGHV9-2-1*01	100.0	H3	11	H3-11-1	16	ARFLLRQYFDV	BBBBAALBBAB
D	heavy	Mus.musculus	Mo_IGHV9-2-1*01	95.9	Mo_IGHV9-2-1*01	100.0	H4	8	H4-8-1	16	LETSASTA	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022