PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1YJD

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Mus.musculus	Mo_IGHV1S12*01	89.0	Mo_IGHV1S12*01	92.3	H1	13	H1-13-1	19	EASGYTFTSYYIH	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV1S12*01	89.0	Mo_IGHV1S12*01	50.0	H2	10	H2-10-3	18	CIYPGNVNTN	BBBBEALBBB
H	heavy	Mus.musculus	Mo_IGHV1S12*01	89.0	Mo_IGHV1S12*01	50.0	H3	13	H3-13-*	-1	TRSHYGLDWNFDV	BBBBAABBABBAB
H	heavy	Mus.musculus	Mo_IGHV1S12*01	89.0	Mo_IGHV1S12*01	75.0	H4	8	H4-8-1	13	VDTSSNTA	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV15-103*01	100.0	Mo_IGKV15-103*01	81.8	L1	11	L1-11-1	13	HASQNIYVWLN	BBABBAEABBB
L	kappa	Mus.musculus	Mo_IGKV15-103*01	100.0	Mo_IGKV15-103*01	100.0	L2	8	L2-8-1	14	YKASNLHT	BLEABBBB
L	kappa	Mus.musculus	Mo_IGKV15-103*01	100.0	Mo_IGKV15-103*01	85.7	L3	9	L3-9-cis7-1	10	QQGQTYPYT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV15-103*01	100.0	Mo_IGKV15-103*01	100.0	L4	6	L4-6-1	10	GSGTGF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022