PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1YED

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV1-133*01	95.7	Mo_IGKV1-133*01	100.0	L1	16	L1-16-1	10	KSSQSLlysngKTYLN	BBABBABBAALBBBBB
A	kappa	Mus.musculus	Mo_IGKV1-133*01	95.7	Mo_IGKV1-133*01	87.5	L2	8	L2-8-1	10	YLVSKLES	BLLABBBB
A	kappa	Mus.musculus	Mo_IGKV1-133*01	95.7	Mo_IGKV1-133*01	100.0	L3	9	L3-9-2	18	VQGTHFPYT	BBAABABBB
A	kappa	Mus.musculus	Mo_IGKV1-133*01	95.7	Mo_IGKV1-133*01	100.0	L4	6	L4-6-1	13	GSGTDF	EEEABB
B	heavy	Mus.musculus	Mo_IGHV1-76*01	87.5	Mo_IGHV1-76*01	61.5	H1	13	H1-13-1	14	KTSGYIFTSYWIH	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV1-76*01	87.5	Mo_IGHV1-76*01	80.0	H2	10	H2-10-1	8	RIYPGTGGTY	BBBAAALBBB
B	heavy	Mus.musculus	Mo_IGHV1-76*01	87.5	Mo_IGHV1-76*01	50.0	H3	17	H3-17-*	-1	TRWGFttvRENYYAMDY
B	heavy	Mus.musculus	Mo_IGHV1-76*01	87.5	Mo_IGHV1-76*01	87.5	H4	8	H4-8-1	9	ADKSSSTA	BBAAALBB
H	heavy	Mus.musculus	Mo_IGHV1-76*01	87.5	Mo_IGHV1-76*01	61.5	H1	13	H1-13-1	14	KTSGYIFTSYWIH	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV1-76*01	87.5	Mo_IGHV1-76*01	80.0	H2	10	H2-10-1	9	RIYPGTGGTY	BBBAAALBBB
H	heavy	Mus.musculus	Mo_IGHV1-76*01	87.5	Mo_IGHV1-76*01	50.0	H3	17	H3-17-*	-1	TRWGFttvRENYYAMDY
H	heavy	Mus.musculus	Mo_IGHV1-76*01	87.5	Mo_IGHV1-76*01	87.5	H4	8	H4-8-1	9	ADKSSSTA	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV1-133*01	95.7	Mo_IGKV1-133*01	100.0	L1	16	L1-16-1	11	KSSQSLlysngKTYLN	BBABBABBAALBBBBB
L	kappa	Mus.musculus	Mo_IGKV1-133*01	95.7	Mo_IGKV1-133*01	87.5	L2	8	L2-8-1	10	YLVSKLES	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV1-133*01	95.7	Mo_IGKV1-133*01	100.0	L3	9	L3-9-2	17	VQGTHFPYT	BBAABABBB
L	kappa	Mus.musculus	Mo_IGKV1-133*01	95.7	Mo_IGKV1-133*01	100.0	L4	6	L4-6-1	12	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022