PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1XGY

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Mus.musculus	Mo_IGHV1-84*01	94.5	Mo_IGHV1-84*01	100.0	H1	13	H1-13-1	11	KASGYTFTDYYIN	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV1-84*01	94.5	Mo_IGHV1-84*01	70.0	H2	10	H2-10-1	15	WIFPRNGNTK	BBBAAALBBB
H	heavy	Mus.musculus	Mo_IGHV1-84*01	94.5	Mo_IGHV1-84*01	50.0	H3	10	H3-10-*	-1	ATTVSYVMDY	BBBAABBLAB
H	heavy	Mus.musculus	Mo_IGHV1-84*01	94.5	Mo_IGHV1-84*01	87.5	H4	8	H4-8-1	12	VDKSSSTA	BBAAALBB
I	heavy	Mus.musculus	Mo_IGHV1-84*01	94.5	Mo_IGHV1-84*01	100.0	H1	13	H1-13-1	12	KASGYTFTDYYIN	BBBLBBAAABBBB
I	heavy	Mus.musculus	Mo_IGHV1-84*01	94.5	Mo_IGHV1-84*01	70.0	H2	10	H2-10-1	17	WIFPRNGNTK	BBBAAALBBB
I	heavy	Mus.musculus	Mo_IGHV1-84*01	94.5	Mo_IGHV1-84*01	50.0	H3	10	H3-10-*	-1	ATTVSYVMDY	BBBAABBLAB
I	heavy	Mus.musculus	Mo_IGHV1-84*01	94.5	Mo_IGHV1-84*01	87.5	H4	8	H4-8-1	10	VDKSSSTA	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV2-109*04	98.6	Mo_IGKV2-109*04	93.8	L1	16	L1-16-1	12	RSSKSLlhsngITYLY	BBABBABBAALBBBBB
L	kappa	Mus.musculus	Mo_IGKV2-109*04	98.6	Mo_IGKV2-109*04	100.0	L2	8	L2-8-1	12	YRMSNLAS	BLEABBBB
L	kappa	Mus.musculus	Mo_IGKV2-109*04	98.6	Mo_IGKV2-109*04	71.4	L3	9	L3-9-cis7-1	9	GQMLEHPLT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV2-109*04	98.6	Mo_IGKV2-109*04	100.0	L4	6	L4-6-2	20	GSGTDF	EBEABB
M	kappa	Mus.musculus	Mo_IGKV2-109*04	98.6	Mo_IGKV2-109*04	93.8	L1	16	L1-16-1	13	RSSKSLlhsngITYLY	BBABBABBAALBBBBB
M	kappa	Mus.musculus	Mo_IGKV2-109*04	98.6	Mo_IGKV2-109*04	100.0	L2	8	L2-8-1	12	YRMSNLAS	BLLABBBB
M	kappa	Mus.musculus	Mo_IGKV2-109*04	98.6	Mo_IGKV2-109*04	71.4	L3	9	L3-9-cis7-1	9	GQMLEHPLT	BBAABBbBB
M	kappa	Mus.musculus	Mo_IGKV2-109*04	98.6	Mo_IGKV2-109*04	100.0	L4	6	L4-6-2	20	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022