PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1XCT

#CDRs = 8; #Clusters = 14.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV8-21*01	95.7	Mo_IGKV8-21*01	100.0	L1	17	L1-17-1	12	KSSQSLlnsrtrKNYLA	BBABBABBAAALBBBBB
A	kappa	Mus.musculus	Mo_IGKV8-21*01	95.7	Mo_IGKV8-21*01	100.0	L2	8	L2-8-1	17	YWASTRES	BLLABBBB
A	kappa	Mus.musculus	Mo_IGKV8-21*01	95.7	Mo_IGKV8-21*01	50.0	L3	9	L3-9-cis7-1	13	KQAYIPPLT	BBAABBbBB
A	kappa	Mus.musculus	Mo_IGKV8-21*01	95.7	Mo_IGKV8-21*01	100.0	L4	6	L4-6-1	16	GSGTDF	EEEABB
B	heavy	Mus.musculus	Mo_IGHV9-2-1*01	95.9	Mo_IGHV9-2-1*01	92.3	H1	13	H1-13-1	15	KASGYTFTDFSMH	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV9-2-1*01	95.9	Mo_IGHV9-2-1*01	90.0	H2	10	H2-10-1	24	WVNTETGEPT	BBBAAALBBB
B	heavy	Mus.musculus	Mo_IGHV9-2-1*01	95.9	Mo_IGHV9-2-1*01	100.0	H3	11	H3-11-1	17	ARFLLRQYFDV	BBBBAALBBAB
B	heavy	Mus.musculus	Mo_IGHV9-2-1*01	95.9	Mo_IGHV9-2-1*01	100.0	H4	8	H4-8-1	16	LETSASTA	BBAAALBB
C	kappa	Mus.musculus	Mo_IGKV8-21*01	95.7	Mo_IGKV8-21*01	100.0	L1	17	L1-17-*	-1	KSSQSLlnsrtrKNYLA	BBABBABBBLALBALBB
C	kappa	Mus.musculus	Mo_IGKV8-21*01	95.7	Mo_IGKV8-21*01	100.0	L2	8	L2-8-*	-1	YWASTRES	BLEBALBB
C	kappa	Mus.musculus	Mo_IGKV8-21*01	95.7	Mo_IGKV8-21*01	50.0	L3	9	L3-9-*	-1	KQAYIPPLT	BBBBEABBB
C	kappa	Mus.musculus	Mo_IGKV8-21*01	95.7	Mo_IGKV8-21*01	100.0	L4	6	L4-6-1	16	GSGTDF	EEEABB
D	heavy	Mus.musculus	Mo_IGHV9-2-1*01	95.9	Mo_IGHV9-2-1*01	92.3	H1	13	H1-13-*	-1	KASGYTFTDFSMH	BBELBBBAABBBB
D	heavy	Mus.musculus	Mo_IGHV9-2-1*01	95.9	Mo_IGHV9-2-1*01	90.0	H2	10	H2-10-6	22	WVNTETGEPT	BBBABLLBBB
D	heavy	Mus.musculus	Mo_IGHV9-2-1*01	95.9	Mo_IGHV9-2-1*01	100.0	H3	11	H3-11-1	15	ARFLLRQYFDV	BBBBAALBBAB
D	heavy	Mus.musculus	Mo_IGHV9-2-1*01	95.9	Mo_IGHV9-2-1*01	100.0	H4	8	H4-8-*	-1	LETSASTA	BAELLLBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022