PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1XCQ

#CDRs = 8; #Clusters = 14.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV8-21*01	95.7	Mo_IGKV8-21*01	100.0	L1	17	L1-17-*	-1	KSSQSLlnsrtrKNYLA	BBABEABBAAALBBABB
A	kappa	Mus.musculus	Mo_IGKV8-21*01	95.7	Mo_IGKV8-21*01	100.0	L2	8	L2-8-1	19	YWASTRES	BLLABBBB
A	kappa	Mus.musculus	Mo_IGKV8-21*01	95.7	Mo_IGKV8-21*01	50.0	L3	9	L3-9-cis7-1	18	KQAYIPPLT	BBAABBbBB
A	kappa	Mus.musculus	Mo_IGKV8-21*01	95.7	Mo_IGKV8-21*01	100.0	L4	6	L4-6-1	24	GSGTDF	EBEABB
B	heavy	Mus.musculus	Mo_IGHV9-2-1*01	95.9	Mo_IGHV9-2-1*01	92.3	H1	13	H1-13-*	-1	KASGYTFTDFSMH	BBBLBBABABBBB
B	heavy	Mus.musculus	Mo_IGHV9-2-1*01	95.9	Mo_IGHV9-2-1*01	90.0	H2	10	H2-10-*	-1	WVNTETGEPT	BBBAAALBBB
B	heavy	Mus.musculus	Mo_IGHV9-2-1*01	95.9	Mo_IGHV9-2-1*01	100.0	H3	11	H3-11-1	20	ARFLLRQYFDV	BBBBAALBBAB
B	heavy	Mus.musculus	Mo_IGHV9-2-1*01	95.9	Mo_IGHV9-2-1*01	100.0	H4	8	H4-8-1	28	LETSASTA	BBAAALBB
C	kappa	Mus.musculus	Mo_IGKV8-21*01	95.7	Mo_IGKV8-21*01	100.0	L1	17	L1-17-*	-1	KSSQSLlnsrtrKNYLA	BBAAEABBAALLBBBBB
C	kappa	Mus.musculus	Mo_IGKV8-21*01	95.7	Mo_IGKV8-21*01	100.0	L2	8	L2-8-1	20	YWASTRES	BLEABBBB
C	kappa	Mus.musculus	Mo_IGKV8-21*01	95.7	Mo_IGKV8-21*01	50.0	L3	9	L3-9-cis7-1	23	KQAYIPPLT	BBAABBbBB
C	kappa	Mus.musculus	Mo_IGKV8-21*01	95.7	Mo_IGKV8-21*01	100.0	L4	6	L4-6-*	-1	GSGTDF	BLEABB
D	heavy	Mus.musculus	Mo_IGHV9-2-1*01	95.9	Mo_IGHV9-2-1*01	92.3	H1	13	H1-13-*	-1	KASGYTFTDFSMH	BBBLBBAABBBBB
D	heavy	Mus.musculus	Mo_IGHV9-2-1*01	95.9	Mo_IGHV9-2-1*01	90.0	H2	10	H2-10-*	-1	WVNTETGEPT	BBBAAALBBB
D	heavy	Mus.musculus	Mo_IGHV9-2-1*01	95.9	Mo_IGHV9-2-1*01	100.0	H3	11	H3-11-1	24	ARFLLRQYFDV	BBBBAALEBAB
D	heavy	Mus.musculus	Mo_IGHV9-2-1*01	95.9	Mo_IGHV9-2-1*01	100.0	H4	8	H4-8-*	-1	LETSASTA	BBAAALBB
E	kappa	Mus.musculus	Mo_IGKV8-21*01	95.7	Mo_IGKV8-21*01	100.0	L1	17	L1-17-*	-1	KSSQSLlnsrtrKNYLA	BBABEABBAAALBBBBB
E	kappa	Mus.musculus	Mo_IGKV8-21*01	95.7	Mo_IGKV8-21*01	100.0	L2	8	L2-8-1	18	YWASTRES	BLLABBBB
E	kappa	Mus.musculus	Mo_IGKV8-21*01	95.7	Mo_IGKV8-21*01	50.0	L3	9	L3-9-cis7-1	20	KQAYIPPLT	BBAABBbBB
E	kappa	Mus.musculus	Mo_IGKV8-21*01	95.7	Mo_IGKV8-21*01	100.0	L4	6	L4-6-1	16	GSGTDF	EEEABB
F	heavy	Mus.musculus	Mo_IGHV9-2-1*01	95.9	Mo_IGHV9-2-1*01	92.3	H1	13	H1-13-*	-1	KASGYTFTDFSMH	BBBLBBAAAEBBB
F	heavy	Mus.musculus	Mo_IGHV9-2-1*01	95.9	Mo_IGHV9-2-1*01	90.0	H2	10	H2-10-1	36	WVNTETGEPT	BBBAAALBBB
F	heavy	Mus.musculus	Mo_IGHV9-2-1*01	95.9	Mo_IGHV9-2-1*01	100.0	H3	11	H3-11-1	18	ARFLLRQYFDV	BBBBAALBBAB
F	heavy	Mus.musculus	Mo_IGHV9-2-1*01	95.9	Mo_IGHV9-2-1*01	100.0	H4	8	H4-8-*	-1	LETSASTA	BAEAALBB
G	kappa	Mus.musculus	Mo_IGKV8-21*01	95.7	Mo_IGKV8-21*01	100.0	L1	17	L1-17-*	-1	KSSQSLlnsrtrKNYLA	BBABBAEBAAALBBABE
G	kappa	Mus.musculus	Mo_IGKV8-21*01	95.7	Mo_IGKV8-21*01	100.0	L2	8	L2-8-*	-1	YWASTRES	BLLBBBBB
G	kappa	Mus.musculus	Mo_IGKV8-21*01	95.7	Mo_IGKV8-21*01	50.0	L3	9	L3-9-cis7-1	29	KQAYIPPLT	BBAABBbBB
G	kappa	Mus.musculus	Mo_IGKV8-21*01	95.7	Mo_IGKV8-21*01	100.0	L4	6	L4-6-*	-1	GSGTDF	EBEABB
H	heavy	Mus.musculus	Mo_IGHV9-2-1*01	95.9	Mo_IGHV9-2-1*01	92.3	H1	13	H1-13-1	25	KASGYTFTDFSMH	BBBEBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV9-2-1*01	95.9	Mo_IGHV9-2-1*01	90.0	H2	10	H2-10-*	-1	WVNTETGEPT	BBLAAALBBB
H	heavy	Mus.musculus	Mo_IGHV9-2-1*01	95.9	Mo_IGHV9-2-1*01	100.0	H3	11	H3-11-*	-1	ARFLLRQYFDV	BBBBAALBBAB
H	heavy	Mus.musculus	Mo_IGHV9-2-1*01	95.9	Mo_IGHV9-2-1*01	100.0	H4	8	H4-8-1	19	LETSASTA	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022