PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1V7M

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Mus.musculus	Mo_IGHV6-6*01	98.6	Mo_IGHV6-6*01	100.0	H1	13	H1-13-1	11	AASGFTFSDAWMD	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV6-6*01	98.6	Mo_IGHV6-6*01	66.7	H2	12	H2-12-1	7	EIRSKvnNHAIH	BBBBAAALLBBB
H	heavy	Mus.musculus	Mo_IGHV6-6*01	98.6	Mo_IGHV6-6*01	0.0	H3	7	H3-7-*	-1	SGWSFLY	BBLLLAB
H	heavy	Mus.musculus	Mo_IGHV6-6*01	98.6	Mo_IGHV6-6*01	100.0	H4	8	H4-8-1	11	RDDSKSSV	BBAAALBB
I	heavy	Mus.musculus	Mo_IGHV6-6*01	98.6	Mo_IGHV6-6*01	100.0	H1	13	H1-13-1	12	AASGFTFSDAWMD	BBBLBBAAABBBB
I	heavy	Mus.musculus	Mo_IGHV6-6*01	98.6	Mo_IGHV6-6*01	66.7	H2	12	H2-12-1	9	EIRSKvnNHAIH	BBBBAAALLBBB
I	heavy	Mus.musculus	Mo_IGHV6-6*01	98.6	Mo_IGHV6-6*01	0.0	H3	7	H3-7-*	-1	SGWSFLY	BBLLLAB
I	heavy	Mus.musculus	Mo_IGHV6-6*01	98.6	Mo_IGHV6-6*01	100.0	H4	8	H4-8-1	9	RDDSKSSV	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV4-57*01	95.6	Mo_IGKV4-57*01	90.0	L1	10	L1-10-1	8	SASSSVSYMY	BBABBBABBB
L	kappa	Mus.musculus	Mo_IGKV4-57*01	95.6	Mo_IGKV4-57*01	100.0	L2	8	L2-8-1	9	YSTSNLAS	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV4-57*01	95.6	Mo_IGKV4-57*01	75.0	L3	9	L3-9-cis7-1	24	QQRSGYPRT	BBAAEBbBB
L	kappa	Mus.musculus	Mo_IGKV4-57*01	95.6	Mo_IGKV4-57*01	100.0	L4	6	L4-6-1	11	GSGTSY	EBEABB
M	kappa	Mus.musculus	Mo_IGKV4-57*01	95.6	Mo_IGKV4-57*01	90.0	L1	10	L1-10-1	11	SASSSVSYMY	BBABBBABBB
M	kappa	Mus.musculus	Mo_IGKV4-57*01	95.6	Mo_IGKV4-57*01	100.0	L2	8	L2-8-1	7	YSTSNLAS	BLLABBBB
M	kappa	Mus.musculus	Mo_IGKV4-57*01	95.6	Mo_IGKV4-57*01	75.0	L3	9	L3-9-cis7-1	23	QQRSGYPRT	BBAAEBbBB
M	kappa	Mus.musculus	Mo_IGKV4-57*01	95.6	Mo_IGKV4-57*01	100.0	L4	6	L4-6-1	13	GSGTSY	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022