PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1UZ6

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
E	kappa	Mus.musculus	Mo_IGKV2-109*01	100.0	Mo_IGKV2-109*01	93.8	L1	16	L1-16-1	6	RSSKSLlysngITYLY	BBABBABBAALBBBBB
E	kappa	Mus.musculus	Mo_IGKV2-109*01	100.0	Mo_IGKV2-109*01	100.0	L2	8	L2-8-1	12	YQMSNLAS	BLEABBBB
E	kappa	Mus.musculus	Mo_IGKV2-109*01	100.0	Mo_IGKV2-109*01	85.7	L3	9	L3-9-cis7-1	17	AQNLEVPWT	BBBABBbBB
E	kappa	Mus.musculus	Mo_IGKV2-109*01	100.0	Mo_IGKV2-109*01	100.0	L4	6	L4-6-*	-1	GSGTDF	EBEABB
F	heavy	Mus.musculus	Mo_IGHV4-1*02	98.6	Mo_IGHV4-1*02	92.3	H1	13	H1-13-1	9	AASGFDFSGYWMS	BBBLBBAAABBBB
F	heavy	Mus.musculus	Mo_IGHV4-1*02	98.6	Mo_IGHV4-1*02	100.0	H2	10	H2-10-2	10	EINPDSSTIN	BBBAALABBB
F	heavy	Mus.musculus	Mo_IGHV4-1*02	98.6	Mo_IGHV4-1*02	100.0	H3	10	H3-10-*	-1	ARETGTRFDY	BBLBLBAABB
F	heavy	Mus.musculus	Mo_IGHV4-1*02	98.6	Mo_IGHV4-1*02	100.0	H4	8	H4-8-1	6	RDNAKNTL	BBAAALBB
H	heavy	Mus.musculus	Mo_IGHV4-1*02	98.6	Mo_IGHV4-1*02	92.3	H1	13	H1-13-1	10	AASGFDFSGYWMS	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV4-1*02	98.6	Mo_IGHV4-1*02	100.0	H2	10	H2-10-2	10	EINPDSSTIN	BBBAALABBB
H	heavy	Mus.musculus	Mo_IGHV4-1*02	98.6	Mo_IGHV4-1*02	100.0	H3	10	H3-10-*	-1	ARETGTRFDY	BBLBLBAABB
H	heavy	Mus.musculus	Mo_IGHV4-1*02	98.6	Mo_IGHV4-1*02	100.0	H4	8	H4-8-1	5	RDNAKNTL	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV2-109*01	100.0	Mo_IGKV2-109*01	93.8	L1	16	L1-16-1	8	RSSKSLlysngITYLY	BBABBABBAALBBBBB
L	kappa	Mus.musculus	Mo_IGKV2-109*01	100.0	Mo_IGKV2-109*01	100.0	L2	8	L2-8-1	9	YQMSNLAS	BLEABBBB
L	kappa	Mus.musculus	Mo_IGKV2-109*01	100.0	Mo_IGKV2-109*01	85.7	L3	9	L3-9-cis7-1	14	AQNLEVPWT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV2-109*01	100.0	Mo_IGKV2-109*01	100.0	L4	6	L4-6-1	28	GSGTDF	EBEABB
M	kappa	Mus.musculus	Mo_IGKV2-109*01	100.0	Mo_IGKV2-109*01	93.8	L1	16	L1-16-1	7	RSSKSLlysngITYLY	BBABBABBAALBBBBB
M	kappa	Mus.musculus	Mo_IGKV2-109*01	100.0	Mo_IGKV2-109*01	100.0	L2	8	L2-8-1	13	YQMSNLAS	BLEABBBB
M	kappa	Mus.musculus	Mo_IGKV2-109*01	100.0	Mo_IGKV2-109*01	85.7	L3	9	L3-9-cis7-1	14	AQNLEVPWT	BBAABBbBB
M	kappa	Mus.musculus	Mo_IGKV2-109*01	100.0	Mo_IGKV2-109*01	100.0	L4	6	L4-6-1	32	GSGTDF	EBEABB
P	heavy	Mus.musculus	Mo_IGHV4-1*02	98.6	Mo_IGHV4-1*02	92.3	H1	13	H1-13-1	9	AASGFDFSGYWMS	BBBLBBAAABBBB
P	heavy	Mus.musculus	Mo_IGHV4-1*02	98.6	Mo_IGHV4-1*02	100.0	H2	10	H2-10-2	10	EINPDSSTIN	BBBAALABBB
P	heavy	Mus.musculus	Mo_IGHV4-1*02	98.6	Mo_IGHV4-1*02	100.0	H3	10	H3-10-*	-1	ARETGTRFDY	BBLBLBAABB
P	heavy	Mus.musculus	Mo_IGHV4-1*02	98.6	Mo_IGHV4-1*02	100.0	H4	8	H4-8-1	7	RDNAKNTL	BBAAALBB
V	kappa	Mus.musculus	Mo_IGKV2-109*01	100.0	Mo_IGKV2-109*01	93.8	L1	16	L1-16-1	7	RSSKSLlysngITYLY	BBABBABBAALBBBBB
V	kappa	Mus.musculus	Mo_IGKV2-109*01	100.0	Mo_IGKV2-109*01	100.0	L2	8	L2-8-1	11	YQMSNLAS	BLEABBBB
V	kappa	Mus.musculus	Mo_IGKV2-109*01	100.0	Mo_IGKV2-109*01	85.7	L3	9	L3-9-cis7-1	16	AQNLEVPWT	BBAABBbBB
V	kappa	Mus.musculus	Mo_IGKV2-109*01	100.0	Mo_IGKV2-109*01	100.0	L4	6	L4-6-1	18	GSGTDF	EBEABB
W	heavy	Mus.musculus	Mo_IGHV4-1*02	98.6	Mo_IGHV4-1*02	92.3	H1	13	H1-13-1	8	AASGFDFSGYWMS	BBBLBBAAABBBB
W	heavy	Mus.musculus	Mo_IGHV4-1*02	98.6	Mo_IGHV4-1*02	100.0	H2	10	H2-10-2	11	EINPDSSTIN	BBBAALABBB
W	heavy	Mus.musculus	Mo_IGHV4-1*02	98.6	Mo_IGHV4-1*02	100.0	H3	10	H3-10-*	-1	ARETGTRFDY	BBLBLBAABB
W	heavy	Mus.musculus	Mo_IGHV4-1*02	98.6	Mo_IGHV4-1*02	100.0	H4	8	H4-8-1	6	RDNAKNTL	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022