PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1T4K

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV8-21*01	91.3	Mo_IGKV8-21*01	88.2	L1	17	L1-17-1	9	RSSQSLfnsrtrKNYLA	BBABBABBAAALBBBBB
A	kappa	Mus.musculus	Mo_IGKV8-21*01	91.3	Mo_IGKV8-21*01	100.0	L2	8	L2-8-1	18	YWASTRES	BLLABBBB
A	kappa	Mus.musculus	Mo_IGKV8-21*01	91.3	Mo_IGKV8-21*01	83.3	L3	8	L3-8-*	-1	KQSYDLPT	BBAABLBB
A	kappa	Mus.musculus	Mo_IGKV8-21*01	91.3	Mo_IGKV8-21*01	100.0	L4	6	L4-6-1	3	GSGTDF	EBEABB
B	heavy	Mus.musculus	Mo_IGHV2-6-5*01	86.3	Mo_IGHV2-6-5*01	92.3	H1	13	H1-13-1	13	TVSGFSLSDYGVS	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV2-6-5*01	86.3	Mo_IGHV2-6-5*01	88.9	H2	9	H2-9-1	10	VIWGDGSTY	BBBAALBBB
B	heavy	Mus.musculus	Mo_IGHV2-6-5*01	86.3	Mo_IGHV2-6-5*01	100.0	H3	11	H3-11-*	-1	AKHTYGGPGDS	BBBBABEBEBB
B	heavy	Mus.musculus	Mo_IGHV2-6-5*01	86.3	Mo_IGHV2-6-5*01	87.5	H4	8	H4-8-1	11	KDSSKSQV	BBAAALBB
C	kappa	Mus.musculus	Mo_IGKV8-21*01	91.3	Mo_IGKV8-21*01	88.2	L1	17	L1-17-1	9	RSSQSLfnsrtrKNYLA	BBABBABBAAALBBBBB
C	kappa	Mus.musculus	Mo_IGKV8-21*01	91.3	Mo_IGKV8-21*01	100.0	L2	8	L2-8-1	19	YWASTRES	BLLABBBB
C	kappa	Mus.musculus	Mo_IGKV8-21*01	91.3	Mo_IGKV8-21*01	83.3	L3	8	L3-8-*	-1	KQSYDLPT	BBAABLBB
C	kappa	Mus.musculus	Mo_IGKV8-21*01	91.3	Mo_IGKV8-21*01	100.0	L4	6	L4-6-1	4	GSGTDF	EBEABB
D	heavy	Mus.musculus	Mo_IGHV2-6-5*01	86.3	Mo_IGHV2-6-5*01	92.3	H1	13	H1-13-1	12	TVSGFSLSDYGVS	BBBLBBAAABBBB
D	heavy	Mus.musculus	Mo_IGHV2-6-5*01	86.3	Mo_IGHV2-6-5*01	88.9	H2	9	H2-9-1	11	VIWGDGSTY	BBBAALBBB
D	heavy	Mus.musculus	Mo_IGHV2-6-5*01	86.3	Mo_IGHV2-6-5*01	100.0	H3	11	H3-11-*	-1	AKHTYGGPGDS	BBBBABEBEBB
D	heavy	Mus.musculus	Mo_IGHV2-6-5*01	86.3	Mo_IGHV2-6-5*01	87.5	H4	8	H4-8-1	9	KDSSKSQV	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022