PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1T04

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	27.3	L1	11	L1-11-1	14	KASENVDTYVS	BBABBAEAABB
A	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	37.5	L2	8	L2-8-1	19	YGASNRYT	BLLABBBB
A	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	57.1	L3	9	L3-9-cis7-1	15	GQSYNYPFT	BBAABBbBB
A	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	13	GSGTDF	EBEABB
B	heavy	Homo.sapiens	Hu_IGHV1-69*08	83.6	Hu_IGHV1-69*08	53.8	H1	13	H1-13-1	17	KASGYIFTSSWIN	BBBLBBAAABBBB
B	heavy	Homo.sapiens	Hu_IGHV1-69*08	83.6	Hu_IGHV1-69*08	40.0	H2	10	H2-10-1	13	RIDPSDGEVH	BBBAAALBBB
B	heavy	Homo.sapiens	Hu_IGHV1-69*08	83.6	Hu_IGHV1-69*08	100.0	H3	10	H3-10-2	23	ARGFLPWFAD	BBBBEABBAB
B	heavy	Homo.sapiens	Hu_IGHV1-69*08	83.6	Hu_IGHV1-69*08	75.0	H4	8	H4-8-1	9	VDKSTNTA	BBAAALBB
C	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	27.3	L1	11	L1-11-1	12	KASENVDTYVS	BBABBAEAABB
C	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	37.5	L2	8	L2-8-1	13	YGASNRYT	BLLABBBB
C	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	57.1	L3	9	L3-9-cis7-1	7	GQSYNYPFT	BBAABBbBB
C	kappa	Homo.sapiens	Hu_IGKV1-39*01	97.1	Hu_IGKV1-39*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
D	heavy	Homo.sapiens	Hu_IGHV1-69*08	83.6	Hu_IGHV1-69*08	53.8	H1	13	H1-13-1	17	KASGYIFTSSWIN	BBBLBBAAABBBB
D	heavy	Homo.sapiens	Hu_IGHV1-69*08	83.6	Hu_IGHV1-69*08	40.0	H2	10	H2-10-1	14	RIDPSDGEVH	BBBAAALBBB
D	heavy	Homo.sapiens	Hu_IGHV1-69*08	83.6	Hu_IGHV1-69*08	100.0	H3	10	H3-10-2	23	ARGFLPWFAD	BBBBEABBAB
D	heavy	Homo.sapiens	Hu_IGHV1-69*08	83.6	Hu_IGHV1-69*08	75.0	H4	8	H4-8-1	8	VDKSTNTA	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022