PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1SVZ

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Mus.musculus	Mo_IGHV9-2-1*01	84.9	Mo_IGHV9-2-1*01	76.9	H1	13	H1-13-1	12	KATNYAFTDYSMH	BBBLBBAAABBBB
A	heavy	Mus.musculus	Mo_IGHV9-2-1*01	84.9	Mo_IGHV9-2-1*01	90.0	H2	10	H2-10-1	15	WINTETDEPT	BBBAAALBBB
A	heavy	Mus.musculus	Mo_IGHV9-2-1*01	84.9	Mo_IGHV9-2-1*01	50.0	H3	13	H3-13-*	-1	VRDRHDYGEIFTY	BBBAAAALBABAB
A	heavy	Mus.musculus	Mo_IGHV9-2-1*01	84.9	Mo_IGHV9-2-1*01	75.0	H4	8	H4-8-1	6	LDTSTSTA	BBAAALBB
A	kappa	Mus.musculus	Mo_IGKV1-117*01	94.2	Mo_IGKV1-117*01	87.5	L1	16	L1-16-1	9	RSSQTIvhnngNTYLE	BBABBABBAALBBBBB
A	kappa	Mus.musculus	Mo_IGKV1-117*01	94.2	Mo_IGKV1-117*01	100.0	L2	8	L2-8-1	4	YKVSNRFS	BLLABBBB
A	kappa	Mus.musculus	Mo_IGKV1-117*01	94.2	Mo_IGKV1-117*01	85.7	L3	9	L3-9-cis7-1	9	FQGSHFPPT	BBAABBbBB
A	kappa	Mus.musculus	Mo_IGKV1-117*01	94.2	Mo_IGKV1-117*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
B	heavy	Mus.musculus	Mo_IGHV9-2-1*01	84.9	Mo_IGHV9-2-1*01	76.9	H1	13	H1-13-1	17	KATNYAFTDYSMH	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV9-2-1*01	84.9	Mo_IGHV9-2-1*01	90.0	H2	10	H2-10-1	15	WINTETDEPT	BBBAAALBBB
B	heavy	Mus.musculus	Mo_IGHV9-2-1*01	84.9	Mo_IGHV9-2-1*01	50.0	H3	13	H3-13-*	-1	VRDRHDYGEIFTY	BBBAAAALBABAB
B	heavy	Mus.musculus	Mo_IGHV9-2-1*01	84.9	Mo_IGHV9-2-1*01	75.0	H4	8	H4-8-1	15	LDTSTSTA	BBAAALBB
B	kappa	Mus.musculus	Mo_IGKV1-117*01	94.2	Mo_IGKV1-117*01	87.5	L1	16	L1-16-1	12	RSSQTIvhnngNTYLE	BBABBBBBAALBBBBB
B	kappa	Mus.musculus	Mo_IGKV1-117*01	94.2	Mo_IGKV1-117*01	100.0	L2	8	L2-8-1	6	YKVSNRFS	BLLABBBB
B	kappa	Mus.musculus	Mo_IGKV1-117*01	94.2	Mo_IGKV1-117*01	85.7	L3	9	L3-9-cis7-1	12	FQGSHFPPT	BBAABBbBB
B	kappa	Mus.musculus	Mo_IGKV1-117*01	94.2	Mo_IGKV1-117*01	100.0	L4	6	L4-6-1	9	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022