PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1QKZ

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Mus.musculus	Mo_IGHV5-4*02	93.1	Mo_IGHV5-4*02	92.3	H1	13	H1-13-1	7	AASGFTFSDYYMF	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV5-4*02	93.1	Mo_IGHV5-4*02	90.0	H2	10	H2-10-2	9	TISDGGAYTY	BBBAALABBB
H	heavy	Mus.musculus	Mo_IGHV5-4*02	93.1	Mo_IGHV5-4*02	100.0	H3	12	H3-12-*	-1	ARDPLEYYGMDY	BBBBAABBBBAB
H	heavy	Mus.musculus	Mo_IGHV5-4*02	93.1	Mo_IGHV5-4*02	100.0	H4	8	H4-8-1	8	RDNAKNNL	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV1-110*01	97.1	Mo_IGKV1-110*01	100.0	L1	16	L1-16-1	6	RSSQSLvhsngNTYLH	BBABBABBAALBBBBB
L	kappa	Mus.musculus	Mo_IGKV1-110*01	97.1	Mo_IGKV1-110*01	87.5	L2	8	L2-8-1	7	YTVSNRFS	BLEABBBB
L	kappa	Mus.musculus	Mo_IGKV1-110*01	97.1	Mo_IGKV1-110*01	85.7	L3	8	L3-8-3	9	SQSTHFPT	BBAABBBB
L	kappa	Mus.musculus	Mo_IGKV1-110*01	97.1	Mo_IGKV1-110*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022