PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1QFW

#CDRs = 8; #Clusters = 14.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Mus.musculus	Mo_IGHV1S81*02	90.4	Mo_IGHV1S81*02	92.3	H1	13	H1-13-*	-1	KASDYTFTSYWMH	BBBLEBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV1S81*02	90.4	Mo_IGHV1S81*02	80.0	H2	10	H2-10-1	23	EINPTNGRTY	BBBAAALBBB
H	heavy	Mus.musculus	Mo_IGHV1S81*02	90.4	Mo_IGHV1S81*02	100.0	H3	10	H3-10-*	-1	ARRYGNSFDY	BBBALLBBAB
H	heavy	Mus.musculus	Mo_IGHV1S81*02	90.4	Mo_IGHV1S81*02	62.5	H4	8	H4-8-1	16	VAASASTA	BBAAALBB
I	heavy	Mus.musculus	Mo_IGHV5-9*02	87.7	Mo_IGHV5-9*02	92.3	H1	13	H1-13-1	14	AASGFAFSSFDMS	BBBLBBAAABBBB
I	heavy	Mus.musculus	Mo_IGHV5-9*02	87.7	Mo_IGHV5-9*02	50.0	H2	10	H2-10-*	-1	SITNVGTYTY	BBBBLBABBB
I	heavy	Mus.musculus	Mo_IGHV5-9*02	87.7	Mo_IGHV5-9*02	100.0	H3	15	H3-15-*	-1	ARQGTAaQPYWYFDV
I	heavy	Mus.musculus	Mo_IGHV5-9*02	87.7	Mo_IGHV5-9*02	100.0	H4	8	H4-8-1	17	RDNARNTL	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV3-5*01	95.7	Mo_IGKV3-5*01	93.3	L1	15	L1-15-*	-1	RASEsvDSYgnsfMQ
L	kappa	Mus.musculus	Mo_IGKV3-5*01	95.7	Mo_IGKV3-5*01	100.0	L2	8	L2-8-4	19	YRASNLES	BEAABBBB
L	kappa	Mus.musculus	Mo_IGKV3-5*01	95.7	Mo_IGKV3-5*01	71.4	L3	11	L3-11-*	-1	QQSDEYPymYT	BBBBAABBBBB
L	kappa	Mus.musculus	Mo_IGKV3-5*01	95.7	Mo_IGKV3-5*01	100.0	L4	6	L4-6-3	31	GSRTDF	EAAABB
M	kappa	Mus.musculus	Mo_IGKV6-20*01	94.2	Mo_IGKV6-20*01	63.6	L1	11	L1-11-*	-1	KASETVDSFVS	BBABBBBaABB
M	kappa	Mus.musculus	Mo_IGKV6-20*01	94.2	Mo_IGKV6-20*01	62.5	L2	8	L2-8-4	18	FGASNRFS	BEAABBBB
M	kappa	Mus.musculus	Mo_IGKV6-20*01	94.2	Mo_IGKV6-20*01	57.1	L3	9	L3-9-cis7-1	10	GQTYNHPYT	BBAABBbBB
M	kappa	Mus.musculus	Mo_IGKV6-20*01	94.2	Mo_IGKV6-20*01	100.0	L4	6	L4-6-*	-1	GSATDF	EBAABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022