PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1PKQ

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV8-28*01	94.2	Mo_IGKV8-28*01	100.0	L1	17	L1-17-1	12	KSSQSLlnsgnqKNYLA	BBABBABBAAALBBBBB
A	kappa	Mus.musculus	Mo_IGKV8-28*01	94.2	Mo_IGKV8-28*01	100.0	L2	8	L2-8-1	23	YGASTRES	BLLBBBBB
A	kappa	Mus.musculus	Mo_IGKV8-28*01	94.2	Mo_IGKV8-28*01	100.0	L3	9	L3-9-cis7-1	20	QNDHSYPLT	BBAABBbBB
A	kappa	Mus.musculus	Mo_IGKV8-28*01	94.2	Mo_IGKV8-28*01	100.0	L4	6	L4-6-1	14	GSGTDF	EEEABB
B	heavy	Mus.musculus	Mo_IGHV1-9*01	84.9	Mo_IGHV1-9*01	76.9	H1	13	H1-13-1	14	KATGYTFSSFWIE	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV1-9*01	84.9	Mo_IGHV1-9*01	80.0	H2	10	H2-10-3	16	EILPGRGRTN	BBBBEALBBB
B	heavy	Mus.musculus	Mo_IGHV1-9*01	84.9	Mo_IGHV1-9*01	50.0	H3	11	H3-11-*	-1	ATGNTMVNMPY	BBBBAABBLAB
B	heavy	Mus.musculus	Mo_IGHV1-9*01	84.9	Mo_IGHV1-9*01	87.5	H4	8	H4-8-1	12	AETSSNTA	BBAAALBB
F	kappa	Mus.musculus	Mo_IGKV8-28*01	94.2	Mo_IGKV8-28*01	100.0	L1	17	L1-17-1	12	KSSQSLlnsgnqKNYLA	BBABBABBAAALBBBBB
F	kappa	Mus.musculus	Mo_IGKV8-28*01	94.2	Mo_IGKV8-28*01	100.0	L2	8	L2-8-1	23	YGASTRES	BLLBBBBB
F	kappa	Mus.musculus	Mo_IGKV8-28*01	94.2	Mo_IGKV8-28*01	100.0	L3	9	L3-9-cis7-1	20	QNDHSYPLT	BBAABBbBB
F	kappa	Mus.musculus	Mo_IGKV8-28*01	94.2	Mo_IGKV8-28*01	100.0	L4	6	L4-6-1	12	GSGTDF	EEEABB
G	heavy	Mus.musculus	Mo_IGHV1-9*01	84.9	Mo_IGHV1-9*01	76.9	H1	13	H1-13-1	14	KATGYTFSSFWIE	BBBLEBAAABBBB
G	heavy	Mus.musculus	Mo_IGHV1-9*01	84.9	Mo_IGHV1-9*01	80.0	H2	10	H2-10-3	16	EILPGRGRTN	BBBBEALBBB
G	heavy	Mus.musculus	Mo_IGHV1-9*01	84.9	Mo_IGHV1-9*01	50.0	H3	11	H3-11-*	-1	ATGNTMVNMPY	BBBBAABBLAB
G	heavy	Mus.musculus	Mo_IGHV1-9*01	84.9	Mo_IGHV1-9*01	87.5	H4	8	H4-8-1	12	AETSSNTA	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022